B9HNW7_POPTR (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0009s05810 T04048_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s05810.1 CCCH ZF 290 311

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

13 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9GF07_POPTR Populus trichocarpa POPTR_0001s26560 N 0.864
MDP0000200915 Malus x domestica MDP0000200915 N 0.818
MDP0000911962 Malus x domestica MDP0000911962 N 0.818
ppa025636m Prunus persica ppa025636m N 0.773
AT2G41900 Arabidopsis thaliana AT2G41900-TAIR-G N 0.739
BRADI1G11760 Brachypodium distachyon BRADI1G11760 N 0.739
MDP0000699611 Malus x domestica MDP0000699611 N 0.739
MDP0000673185 Malus x domestica MDP0000673185 N 0.739
Cucsa.139290 Cucumis sativus Cucsa.139290 N 0.739
mgf012825m Mimulus guttatus mgf012825m N 0.739
MDP0000196475 Malus x domestica MDP0000196475 N 0.739
MDP0000320891 Malus x domestica MDP0000320891 N 0.739
cassava36564.valid.m1 Manihot esculenta cassava36564.valid.m1 N 0.739