fgenesh1_pg.sca_6_chr9_2_0000705 (Nectria haematococca)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgenesh1_pg.sca_6_chr9_2_0000705 T05254_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.sca_6_chr9_2_0000705 CCCH ZF 136 162

Links

Other CCCH ZF family RBPs
Other Nectria haematococca RBPs

102 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185736 Helobdella robusta 185736 N 0.704
AAEL001778 Aedes aegypti AAEL001778 N 0.704
AAH97882 Xenopus laevis AAH97882 N 0.704
AAI33788 Xenopus laevis AAI33788 N 0.704
AAR97523 Xenopus laevis AAR97523 N 0.704
ACLA_012790 Aspergillus clavatus CADACLAG00001301 N 0.704
AFUA_5G07720 Aspergillus fumigatus CADAFUAG00006406 N 0.704
AGAP007068 Anopheles gambiae AGAP007068 N 0.704
amel4_ncbi_hmm8953 Apis mellifera amel4_ncbi_hmm8953 N 0.704
Ame_R010811 Ailuropoda melanoleuca Ame_R010811 N 0.704
BGIBMGA000186 Bombyx mori BGIBMGA000186 N 0.704
Bm1_06930 Brugia malayi Bm1_06930 N 0.741
CBG18314 Caenorhabditis briggsae CBG18314 N 0.704
CBN12332 Caenorhabditis brenneri CBN12332 N 0.704
CG4973 Drosophila melanogaster FBgn0038772 N 0.704
CIMG_06140 Coccidioides immitis CIMG_06140 N 0.704
CJA02847 Caenorhabditis japonica CJA02847 N 0.704
CPIJ004936 Culex quinquefasciatus CPIJ004936 N 0.704
CpipJ_CPIJ004936 Culex pipiens CpipJ_CPIJ004936 N 0.704
CPSG_00950 Coccidioides posadasii CPSG_00950 N 0.704
CRE04837 Caenorhabditis remanei CRE04837 N 0.704
DGIL_AUG5s12567g4t1 Acyrtosiphon pisum DGIL_AUG5s12567g4t1 N 0.704
EDO07311.1 Babesia bovis EDO07311.1 N 0.704
ENSACAG00000012485 Anolis carolinensis ENSACAG00000012485 N 0.704
ENSCSAVG00000006210 Ciona savignyi ENSCSAVG00000006210 N 0.704
ENSECAG00000004638 Equus caballus ENSECAG00000004638 N 0.704
ENSMEUG00000001855 Macropus eugenii ENSMEUG00000001855 N 0.704
ENSMGAG00000001753 Meleagris gallopavo ENSMGAG00000001753 N 0.704
ENSMLUG00000010856 Myotis lucifugus ENSMLUG00000010856 N 0.704
ENSOANG00000002592 Ornithorhynchus anatinus ENSOANG00000002592 N 0.704
ENSPPYG00000005460 Pongo pygmaeus ENSPPYG00000005460 N 0.704
ENSPPYG00000020676 Pongo pygmaeus ENSPPYG00000020676 N 0.704
ENSSARG00000010436 Sorex araneus ENSSARG00000010436 N 0.704
ENSSSCG00000012610 Sus scrofa ENSSSCG00000012610 N 0.704
ENSSSCG00000012616 Sus scrofa ENSSSCG00000012616 N 0.704
estExt_fgenesh1_pg.C_5430007 Capitella teleta estExt_fgenesh1_pg.C_5430007 N 0.704
estExt_fgenesh1_pm.C_chr_30248 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_30248 N 0.741
estExt_Genewise1.C_11309 Trichoderma virens estExt_Genewise1.C_11309 N 0.704
estExt_Genewise1.C_sca_120492 Lottia gigantea estExt_Genewise1.C_sca_120492 N 0.704
estExt_GenewiseH_1.C_3140043 Nematostella vectensis estExt_GenewiseH_1.C_3140043 N 0.704
fgenesh1_pg.sca_2_chr3_3_0000871 Nectria haematococca fgenesh1_pg.sca_2_chr3_3_0000871 N 0.704
FGSG_08901 Fusarium graminearum FGSG_08901 N 0.778
FOXG_03625 Fusarium oxysporum FOXG_03625 N 0.741
FVEG_11063 Fusarium verticillioides FVEG_11063 N 0.741
GA18564-RA Drosophila pseudoobscura FBgn0064425 N 0.704
GD19337 Drosophila simulans FBgn0190839 N 0.704
GE25648 Drosophila yakuba FBgn0242710 N 0.704
GF17636 Drosophila ananassae FBgn0094654 N 0.704
GG23724 Drosophila erecta FBgn0115865 N 0.704
GH22886 Drosophila grimshawi FBgn0130343 N 0.704
GI22714 Drosophila mojavensis FBgn0145441 N 0.704
GK22373 Drosophila willistoni FBgn0067112 N 0.704
GL12088 Drosophila persimilis FBgn0149696 N 0.704
GM17684 Drosophila sechellia FBgn0172592 N 0.704
LOAG_01140 Loa loa LOAG_01140 N 0.741
LOC100058519 Equus caballus ENSECAG00000003934 N 0.704
LOC100388689 Callithrix jacchus ENSCJAG00000022327 N 0.704
LOC518027 Bos taurus ENSBTAG00000008684 N 0.704
MCYG_07006 Microsporum canis MCYG_07006 N 0.704
nasonia_NCBI_hmm132664 Nasonia vitripennis nasonia_NCBI_hmm132664 N 0.704
NP_001027830.1 Ciona intestinalis ENSCING00000009197 N 0.704
PASA_GEN_19100012 Daphnia pulex PASA_GEN_19100012 N 0.741
PHUM169980 Pediculus humanus PHUM169980 N 0.704
Ppa-tag-331 Pristionchus pacificus PPA25510 N 0.704
PredSwiss_CON4272.1 Pneumocystis carinii PredSwiss_CON4272.1 N 0.704
Q67EQ7_ORYLA Oryzias latipes ENSORLG00000002442 N 0.704
Q67ER3_CHICK Gallus gallus ENSGALG00000000538 N 0.704
R113A_BOVIN Bos taurus ENSBTAG00000006034 N 0.704
rnf-113 Caenorhabditis elegans K01G5.1 N 0.704
RNF113A Dasypus novemcinctus ENSDNOG00000015321 N 0.704
RNF113A Homo sapiens ENSG00000125352 N 0.704
rnf113a Xenopus tropicalis ENSXETG00000002042 N 0.704
RNF113A Echinops telfairi ENSETEG00000018346 N 0.704
RNF113A Procavia capensis ENSPCAG00000014633 N 0.704
RNF113A Otolemur garnettii ENSOGAG00000016171 N 0.704
RNF113A Gorilla gorilla ENSGGOG00000002324 N 0.704
RNF113A Oryctolagus cuniculus ENSOCUG00000016207 N 0.704
RNF113A Macaca mulatta ENSMMUG00000020223 N 0.704
RNF113A Microcebus murinus ENSMICG00000001750 N 0.704
rnf113a Danio rerio ENSDARG00000037930 N 0.704
RNF113A Loxodonta africana ENSLAFG00000013906 N 0.704
RNF113A Choloepus hoffmanni ENSCHOG00000008711 N 0.704
RNF113A Tupaia belangeri ENSTBEG00000012687 N 0.704
RNF113A Vicugna pacos ENSVPAG00000004521 N 0.704
RNF113A Pan troglodytes ENSPTRG00000022231 N 0.704
RNF113A Taeniopygia guttata ENSTGUG00000001947 N 0.704
Rnf113a1 Rattus norvegicus ENSRNOG00000034040 N 0.704
Rnf113a1 Mus musculus ENSMUSG00000036537 N 0.704
RNF113B Takifugu rubripes ENSTRUG00000011142 N 0.704
RNF113B Tetraodon nigroviridis ENSTNIG00000014938 N 0.704
RNF113B Callithrix jacchus ENSCJAG00000004501 N 0.704
RNF113B Homo sapiens ENSG00000139797 N 0.704
RNF113B Gasterosteus aculeatus ENSGACG00000009738 N 0.704
RNF113B Macaca mulatta ENSMMUG00000022250 N 0.704
RNF113B Pan troglodytes ENSPTRG00000005987 N 0.704
RNF113B Gorilla gorilla ENSGGOG00000023052 N 0.704
SPRG_10807 Saprolegnia parasitica SPRG_10807 N 0.704
SPRG_14175 Saprolegnia parasitica SPRG_14175 N 0.704
UREG_07314 Uncinocarpus reesii UREG_07314 N 0.778
WUBG_06682 Wuchereria bancrofti WUBG_06682 N 0.741
XM_538154.2 Canis familiaris ENSCAFG00000018430 N 0.704
XP_002169878.1 Hydra magnipapillata XP_002169878.1 N 0.704