CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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23616_YPL054W
(
Saccharomyces paradoxus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
23616_YPL054W
T05879_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
23616_YPL054W
CCCH ZF
88
113
YSHVPCKFFKMGNCQAGSSCPFSHSP
23616_YPL054W
CCCH ZF
122
144
LPCKYFAKGNCKFGNKCVNAHVL
Links
Other
CCCH ZF
family RBPs
Other
Saccharomyces paradoxus
RBPs
28 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
orf19.329
Candida albicans
orf19.329
N
0.000