23616_YPL054W (Saccharomyces paradoxus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 23616_YPL054W T05879_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
23616_YPL054W CCCH ZF 88 113
23616_YPL054W CCCH ZF 122 144

Links

Other CCCH ZF family RBPs
Other Saccharomyces paradoxus RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LEE1 Saccharomyces cerevisiae YPL054W N 1.000
25080_YPL054W Saccharomyces bayanus 25080_YPL054W N 0.939
22086_YPL054W Saccharomyces mikatae 22086_YPL054W N 0.939
Scas_Contig567.6 Saccharomyces castellii Scas_Contig567.6 N 0.760
ADR062W Ashbya gossypii ADR062W N 0.745
SAKL0H10846g Lachancea kluyveri SAKL0H10846g N 0.745
CPAG_02338 Candida parapsilosis CPAG_02338 N 0.740
estExt_Genewise1Plus.C_130028 Neurospora discreta estExt_Genewise1Plus.C_130028 N 0.740
estExt_Genewise1.C_110035 Neurospora tetrasperma estExt_Genewise1.C_110035 N 0.740
NCU05007 Neurospora crassa NCU05007 N 0.740
orf19.7385 Candida albicans orf19.7385 N 0.740
ZYRO0F08690g Zygosaccharomyces rouxii ZYRO0F08690g N 0.725
KLLA0B09878g Kluyveromyces lactis KLLA0B09878g N 0.725
GLRG_01727 Colletotrichum graminicola GLRG_01727 N 0.720
e_gw1.10.437.1 Cryphonectria parasitica e_gw1.10.437.1 N 0.720
gw1.28.197.1 Nectria haematococca gw1.28.197.1 N 0.720
Pa_5_7490 Podospora anserina Pa_5_7490 N 0.720
DEHA0D17303g Debaryomyces hansenii DEHA0D17303g N 0.720
CHGG_00049 Chaetomium globosum CHGG_00049 N 0.720
A7TTU4_VANPO Vanderwaltozyma polyspora A7TTU4_VANPO N 0.714
estExt_Genewise1.C_81229 Thielavia terrestris estExt_Genewise1.C_81229 N 0.706
estExt_Genewise1.C_60695 Trichoderma atroviride estExt_Genewise1.C_60695 N 0.706
e_gwh1.2.1.2495.1 Pichia stipitis e_gwh1.2.1.2495.1 N 0.706
e_gw1.29.29.1 Trichoderma virens e_gw1.29.29.1 N 0.706
estExt_fgenesh5_pg.C_100355 Trichoderma reesei estExt_fgenesh5_pg.C_100355 N 0.706
MGG_03480 Magnaporthe oryzae MGG_03480 N 0.700
Cd36_85970 Candida dubliniensis Cd36_85970 N 0.700
augustus-scaffold_9.g315 Schizophyllum commune augustus-scaffold_9.g315 N 0.700