CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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23616_YPL054W
(
Saccharomyces paradoxus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
23616_YPL054W
T05879_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
23616_YPL054W
CCCH ZF
88
113
YSHVPCKFFKMGNCQAGSSCPFSHSP
23616_YPL054W
CCCH ZF
122
144
LPCKYFAKGNCKFGNKCVNAHVL
Links
Other
CCCH ZF
family RBPs
Other
Saccharomyces paradoxus
RBPs
28 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LEE1
Saccharomyces cerevisiae
YPL054W
N
1.000
25080_YPL054W
Saccharomyces bayanus
25080_YPL054W
N
0.939
22086_YPL054W
Saccharomyces mikatae
22086_YPL054W
N
0.939
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.760
ADR062W
Ashbya gossypii
ADR062W
N
0.745
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.745
CPAG_02338
Candida parapsilosis
CPAG_02338
N
0.740
estExt_Genewise1Plus.C_130028
Neurospora discreta
estExt_Genewise1Plus.C_130028
N
0.740
estExt_Genewise1.C_110035
Neurospora tetrasperma
estExt_Genewise1.C_110035
N
0.740
NCU05007
Neurospora crassa
NCU05007
N
0.740
orf19.7385
Candida albicans
orf19.7385
N
0.740
ZYRO0F08690g
Zygosaccharomyces rouxii
ZYRO0F08690g
N
0.725
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.725
GLRG_01727
Colletotrichum graminicola
GLRG_01727
N
0.720
e_gw1.10.437.1
Cryphonectria parasitica
e_gw1.10.437.1
N
0.720
gw1.28.197.1
Nectria haematococca
gw1.28.197.1
N
0.720
Pa_5_7490
Podospora anserina
Pa_5_7490
N
0.720
DEHA0D17303g
Debaryomyces hansenii
DEHA0D17303g
N
0.720
CHGG_00049
Chaetomium globosum
CHGG_00049
N
0.720
A7TTU4_VANPO
Vanderwaltozyma polyspora
A7TTU4_VANPO
N
0.714
estExt_Genewise1.C_81229
Thielavia terrestris
estExt_Genewise1.C_81229
N
0.706
estExt_Genewise1.C_60695
Trichoderma atroviride
estExt_Genewise1.C_60695
N
0.706
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.706
e_gw1.29.29.1
Trichoderma virens
e_gw1.29.29.1
N
0.706
estExt_fgenesh5_pg.C_100355
Trichoderma reesei
estExt_fgenesh5_pg.C_100355
N
0.706
MGG_03480
Magnaporthe oryzae
MGG_03480
N
0.700
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.700
augustus-scaffold_9.g315
Schizophyllum commune
augustus-scaffold_9.g315
N
0.700