CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSOCUG00000013664
(
Oryctolagus cuniculus
)
CCHC ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1)
IPR001878
IPR000504
ENSOCUG00000013664
T07298_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000011760
RRM
1
46
LRVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK
ENSOCUP00000011760
CCHC ZF
69
86
SKCYECGESGHLSYACPK
Links
Other
CCHC ZF,RRM
family RBPs
Other
Oryctolagus cuniculus
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZCRB1
Macropus eugenii
ENSMEUG00000003563
N
0.891
ZCRB1
Otolemur garnettii
ENSOGAG00000013178
I
0.824
ZCRB1
Ochotona princeps
ENSOPRG00000011095
I
0.847