CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CRE13706
(
Caenorhabditis remanei
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CRE13706
T09873_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CRE13706
CCHC ZF
4
21
QSCYKCQQPGHISRNCPQ
CRE13706
CCHC ZF
34
51
STCYNCQETGHFSRDCPK
CRE13706
CCHC ZF
70
87
GSCYNCGGRGHYSRDCPS
CRE13706
CCHC ZF
114
131
QKCYNCGRNGHISRECTE
CRE13706
CCHC ZF
138
155
KRCYNCQETGHISRDCPT
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis remanei
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBG13587
Caenorhabditis briggsae
CBG13587
N
0.967
CBN03982
Caenorhabditis brenneri
CBN03982
N
0.944
CJA12261
Caenorhabditis japonica
CJA12261
N
0.889
K08D12.3
Caenorhabditis elegans
K08D12.3
N
0.933
PPA10881
Pristionchus pacificus
PPA10881
N
0.700