K08D12.3 (Caenorhabditis elegans)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 K08D12.3 T10704_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
K08D12.3a.1 CCHC ZF 4 21
K08D12.3a.1 CCHC ZF 35 52
K08D12.3a.1 CCHC ZF 67 84
K08D12.3a.1 CCHC ZF 107 124
K08D12.3a.1 CCHC ZF 131 148
K08D12.3a.2 CCHC ZF 4 21
K08D12.3a.2 CCHC ZF 35 52
K08D12.3a.2 CCHC ZF 67 84
K08D12.3a.2 CCHC ZF 107 124
K08D12.3a.2 CCHC ZF 131 148
K08D12.3b CCHC ZF 4 21

Links

Other CCHC ZF family RBPs
Other Caenorhabditis elegans RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CRE13706 Caenorhabditis remanei CRE13706 N 0.933
CBN03982 Caenorhabditis brenneri CBN03982 N 0.900
CBG13587 Caenorhabditis briggsae CBG13587 N 0.900
CJA12261 Caenorhabditis japonica CJA12261 N 0.844
fgenesh2_kg.6_#_1126_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.6_#_1126_#_11486_1_CFPN N 0.722
fgenesh2_kg.5_#_495_#_0_0_FS3H43Z04IKC5M_CFOT Serpula lacrymans fgenesh2_kg.5_#_495_#_0_0_FS3H43Z04IKC5M_CFOT N 0.722
fgenesh2_kg.5_#_1694_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.5_#_1694_#_11486_1_CFPN N 0.722
fgenesh2_kg.7_#_2034_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.7_#_2034_#_11486_1_CFPN N 0.722
fgenesh2_kg.9_#_513_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.9_#_513_#_11486_1_CFPN N 0.722
nasonia_NCBI_hmm8664 Nasonia vitripennis nasonia_NCBI_hmm8664 N 0.722
PGTG_13387 Puccinia graminis PGTG_13387 N 0.722
fgenesh2_kg.4_#_2864_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.4_#_2864_#_11486_1_CFPN N 0.722
fgenesh2_kg.8_#_1578_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.8_#_1578_#_11486_1_CFPN N 0.722
fgenesh2_kg.7_#_456_#_0_0_FS3H43Z04IKC5M_CFOT Serpula lacrymans fgenesh2_kg.7_#_456_#_0_0_FS3H43Z04IKC5M_CFOT N 0.722
fgenesh2_kg.4_#_2144_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.4_#_2144_#_11486_1_CFPN N 0.722
fgenesh2_kg.12_#_754_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.12_#_754_#_11486_1_CFPN N 0.722
fgenesh2_kg.14_#_548_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.14_#_548_#_11486_1_CFPN N 0.722
fgenesh2_kg.12_#_635_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.12_#_635_#_11486_1_CFPN N 0.722
fgenesh2_kg.1_#_1210_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.1_#_1210_#_11486_1_CFPN N 0.722
fgenesh2_kg.10_#_112_#_0_0_FS3H43Z04IKC5M_CFOT Serpula lacrymans fgenesh2_kg.10_#_112_#_0_0_FS3H43Z04IKC5M_CFOT N 0.722
fgenesh2_kg.3_#_1118_#_0_0_FS3H43Z04IKC5M_CFOT Serpula lacrymans fgenesh2_kg.3_#_1118_#_0_0_FS3H43Z04IKC5M_CFOT N 0.722
fgenesh2_kg.15_#_627_#_0_0_FS3H43Z04IKC5M_CFOT Serpula lacrymans fgenesh2_kg.15_#_627_#_0_0_FS3H43Z04IKC5M_CFOT N 0.722
fgenesh2_kg.2_#_266_#_0_0_FS3H43Z04IKC5M_CFOT Serpula lacrymans fgenesh2_kg.2_#_266_#_0_0_FS3H43Z04IKC5M_CFOT N 0.722
fgenesh2_kg.2_#_2458_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.2_#_2458_#_11486_1_CFPN N 0.722
fgenesh2_kg.20_#_21_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.20_#_21_#_11486_1_CFPN N 0.722
fgenesh2_kg.17_#_294_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.17_#_294_#_11486_1_CFPN N 0.722
fgenesh2_kg.18_#_121_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.18_#_121_#_11486_1_CFPN N 0.722
PPA10881 Pristionchus pacificus PPA10881 N 0.700