CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os03g49330
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os03g49330
T11088_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os03g49330.1
CCHC ZF
61
78
ELCFNCNKPGHTVGKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
65 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB02178.1
Alternaria brassicicola
AB02178.1
N
0.000
AFLA_085050
Aspergillus flavus
CADAFLAG00001284
N
0.000
ANIA_05009
Aspergillus nidulans
CADANIAG00005383
N
0.000
AO090005001273
Aspergillus oryzae
CADAORAG00003159
N
0.000
EAT78031.2
Phaeosphaeria nodorum
EAT78031.2
N
0.000
GSTUMT00007469001
Tuber melanosporum
GSTUMT00007469001
N
0.000
Pc12g15760
Penicillium chrysogenum
Pc12g15760
N
0.000
PMAA_025600
Penicillium marneffei
PMAA_025600
N
0.000
PTRG_03270
Pyrenophora tritici repentis
PTRG_03270
N
0.000
SNOG_14491
Stagonospora nodorum
SNOG_14491
N
0.000
SS1G_11879
Sclerotinia sclerotiorum
SS1G_11879
N
0.000