CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pc12g15760
(
Penicillium chrysogenum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Pc12g15760
T57970_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pc12g15760.t1
RRM
362
425
LFVGNLPTERVTKRDMFHIFHKYGKLAQISIKQAYGFIQFLEASSCRAALDVEQGAIVRGRKIH
Links
Other
RRM
family RBPs
Other
Penicillium chrysogenum
RBPs
25 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Pc22g26960
Penicillium chrysogenum
Pc22g26960
N
0.906
AFLA_085050
Aspergillus flavus
CADAFLAG00001284
N
0.891
AO090005001273
Aspergillus oryzae
CADAORAG00003159
N
0.891
ANIA_05009
Aspergillus nidulans
CADANIAG00005383
N
0.891
ATEG_04498
Aspergillus terreus
CADATEAG00009601
N
0.875
An16g03400
Aspergillus niger
CADANGAG00012812
N
0.859
ACLA_037570
Aspergillus clavatus
CADACLAG00003297
N
0.844
AFUA_3G09770
Aspergillus fumigatus
CADAFUAG00005073
N
0.844
NFIA_067530
Neosartorya fischeri
CADNFIAG00005936
N
0.844
fgenesh1_pm.00168_#_218
Aspergillus carbonarius
fgenesh1_pm.00168_#_218
N
0.844
MCYG_03431
Microsporum canis
MCYG_03431
N
0.812
TEQG_00939
Trichophyton equinum
TEQG_00939
N
0.797
MGYG_00597
Microsporum gypseum
MGYG_00597
N
0.797
TERG_00938
Trichophyton rubrum
TERG_00938
N
0.797
TESG_04474
Trichophyton tonsurans
TESG_04474
N
0.797
TRV_03302
Trichophyton verrucosum
TRV_03302
N
0.781
PMAA_025600
Penicillium marneffei
PMAA_025600
N
0.781
ARB_01198
Arthroderma benhamiae
ARB_01198
N
0.781
PTRG_03270
Pyrenophora tritici repentis
PTRG_03270
N
0.734
SNOG_14491
Stagonospora nodorum
SNOG_14491
N
0.734
GSTUMT00007469001
Tuber melanosporum
GSTUMT00007469001
N
0.734
AB02178.1
Alternaria brassicicola
AB02178.1
N
0.734
EAT78031.2
Phaeosphaeria nodorum
EAT78031.2
N
0.719
BC1G_15263
Botrytis cinerea
BC1G_15263
N
0.703
SS1G_11879
Sclerotinia sclerotiorum
SS1G_11879
N
0.703