CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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29889.m003353
(
Ricinus communis
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
29889.m003353
T13211_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
29889.m003353
CCHC ZF
914
931
KVCYKCKKPGHLSRDCPE
Links
Other
CCHC ZF
family RBPs
Other
Ricinus communis
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
B9NB85_POPTR
Populus trichocarpa
POPTR_0011s10050
N
0.000
BRADI1G74670
Brachypodium distachyon
BRADI1G74670
N
0.000
Glyma20g02910.1
Glycine max
Glyma20g02910.1
N
0.000
MDP0000162585
Malus x domestica
MDP0000162585
N
0.000
PDK_20s1617311g001
Phoenix dactylifera
PDK_20s1617311g001
N
0.000