CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SNOG_05204
(
Stagonospora nodorum
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
SNOG_05204
T17819_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SNOT_05204
KH
140
195
TKGAVQKRIKDETGADVTTRGEYYPDKNMATAANPPLYLRVTSTSKEGLDKATKMI
SNOT_05204
KH
246
311
NLRAQVVGRGGDNVKYIQQETTCKVQIKGRGSGFMEPQSGTESDEPMYLHIAGPRPEGVARAKELC
Links
Other
KH
family RBPs
Other
Stagonospora nodorum
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB03815.1
Alternaria brassicicola
AB03815.1
N
0.805
ACLA_046540
Aspergillus clavatus
CADACLAG00004448
N
0.738
AFLA_112630
Aspergillus flavus
CADAFLAG00004997
N
0.714
AFUA_4G07220
Aspergillus fumigatus
CADAFUAG00008115
N
0.714
An04g01620
Aspergillus niger
CADANGAG00003873
N
0.714
ANIA_04431
Aspergillus nidulans
CADANIAG00006023
N
0.722
AO090023000853
Aspergillus oryzae
CADAORAG00007942
N
0.714
BDBG_02628
Blastomyces dermatitidis
BDBG_02628
N
0.706
HCAG_05583
Histoplasma capsulatum
HCAG_05583
N
0.714
NFIA_109000
Neosartorya fischeri
CADNFIAG00009878
N
0.722
PTRG_04405
Pyrenophora tritici repentis
PTRG_04405
N
0.918