CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh2_pg.C_30010
(
Branchiostoma floridae
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
estExt_fgenesh2_pg.C_30010
T20887_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_pg.C_30010
KH
124
186
TEEYRVPDKMVGLIIGRGGEQITRLQAESGCKVQMAQDSGGLPERVCTLTGTPPSIEHAKRLI
estExt_fgenesh2_pg.C_30010
KH
212
276
VTEMMIPGNKVGLVIGKGGETIRSLQERAGVKMVMIQDGPYMNAPEKPLRITGDPQKTQRAKDLV
estExt_fgenesh2_pg.C_30010
KH
322
384
GMDIPVPRFAVGIVIGKGGEMIKKIQNESGVRVQFKPDDGQNPNRVCQLIGAPDRCQAAAHTI
Links
Other
KH
family RBPs
Other
Branchiostoma floridae
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os01g03230
Oryza sativa
LOC_Os01g03230
N
0.000
LOC_Os01g22100
Oryza sativa
LOC_Os01g22100
N
0.000
LOC_Os03g36620
Oryza sativa
LOC_Os03g36620
N
0.000
LOC_Os05g13510
Oryza sativa
LOC_Os05g13510
N
0.000
LOC_Os06g37290
Oryza sativa
LOC_Os06g37290
N
0.000
LOC_Os07g39230
Oryza sativa
LOC_Os07g39230
N
0.000
LOC_Os10g40800
Oryza sativa
LOC_Os10g40800
N
0.000
LOC_Os12g16430
Oryza sativa
LOC_Os12g16430
N
0.000