CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pa_3_4120
(
Podospora anserina
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
Pa_3_4120
T21908_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pa_3_4120
KH
251
324
DSINVDYSVQQILIGRNRKNIKLIESSTNTAIYFPPPFLSCYSYCPPGATRRGESDVFITGENTQAIEQAKYKI
Pa_3_4120
KH
427
463
TMLSDICANSEADVKFDNRCFTISGSDEAVKTALAVI
Pa_3_4120
KH
477
539
IRVKIELANEHKEFVSGKKNGKINKIMGQSNVQIIFDTFGEYNFNIEVVTHSYEAVKHGLTLV
Pa_3_4120
KH
546
615
SISFHVPDQYHKRIIGIGGQHIQRIMKKHSVFVKFSNAMDRGGLTREDDDSRVDNVICRTPARNAQNLEL
Pa_3_4120
KH
652
682
EIEEIEKMWNCKIVFPSTEQATDELTVSGPQ
Links
Other
KH
family RBPs
Other
Podospora anserina
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_pg.C_670017
Neurospora tetrasperma
estExt_fgenesh1_pg.C_670017
N
0.727
estExt_fgenesh2_pg.C_120096
Neurospora discreta
estExt_fgenesh2_pg.C_120096
N
0.727
e_gw1.1.3735.1
Myceliophthora thermophila
e_gw1.1.3735.1
N
0.775
NCU05266
Neurospora crassa
NCU05266
N
0.727