CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BICC1
(
Pteropus vampyrus
)
KH,SAM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00536 (SAM_1)
IPR018111
IPR021129
ENSPVAG00000008004
T22510_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPVAP00000007555
KH
70
122
GKSGEDFFQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKEDVKEAKEMI
ENSPVAP00000007555
KH
134
199
TLKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNNQAEKSNQVSIAGQPAGVESARVRI
ENSPVAP00000007555
KH
226
268
PSIQHISQTYNISVSFKQRSRMYGATVIVRGSQNNTSAVKEGT
ENSPVAP00000007555
KH
286
348
STQLDIAAQHHLFMMGRNGSNIKHIMQRTGAQIHFPDPSNPQKKSTVYLQGTIESVCLARQYL
ENSPVAP00000007555
SAM
893
934
XXXQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISELN
Links
Other
KH,SAM
family RBPs
Other
Pteropus vampyrus
RBPs
30 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL002879
Aedes aegypti
AAEL002879
I
0.000
AGAP001419
Anopheles gambiae
AGAP001419
I
0.000
amel4_ncbi_hmm4283
Apis mellifera
amel4_ncbi_hmm4283
I
0.000
CG17838
Drosophila melanogaster
FBgn0038826
D
0.000
GA27045-RA
Drosophila pseudoobscura
FBgn0248416
I
0.000
GF16693
Drosophila ananassae
FBgn0093714
I
0.000
GG24121
Drosophila erecta
FBgn0116260
I
0.000
GH17270
Drosophila grimshawi
FBgn0124740
I
0.000
GI10594
Drosophila mojavensis
FBgn0133358
I
0.000
GJ22950
Drosophila virilis
FBgn0210053
I
0.000
GK22469
Drosophila willistoni
FBgn0224446
I
0.000
GM23135
Drosophila sechellia
FBgn0178003
I
0.000
ISCW004858
Ixodes scapularis
ISCW004858
I
0.000
nasonia_NCBI_hmm256414
Nasonia vitripennis
nasonia_NCBI_hmm256414
I
0.000
NCBI_GNO_2900131
Daphnia pulex
NCBI_GNO_2900131
I
0.000
PHUM268060
Pediculus humanus
PHUM268060
I
0.000