CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BICC1
(
Sus scrofa
)
KH,SAM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00536 (SAM_1)
IPR018111
IPR021129
ENSSSCG00000010204
T22513_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000010880
KH
70
122
GKSGEDFFQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKEDVKEAKEMI
ENSSSCP00000010880
KH
134
199
TLKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNNQAEKSNQVSIAGQPAGVESARVRI
ENSSSCP00000010880
KH
226
267
PSIQHISQTYNISVSFKQRSRMYGATVIVRGSQNNTSALKEG
ENSSSCP00000010880
KH
286
348
STQLDIAAQHHLFMMGRNGSNIKHIMQRTGAQIHFPDPSNPQKKSTVYLQGTIESVCLARQYL
ENSSSCP00000010880
SAM
874
934
KGSDLPELFSKLGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISELN
Links
Other
KH,SAM
family RBPs
Other
Sus scrofa
RBPs
30 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACLA_013700
Aspergillus clavatus
CADACLAG00000914
N
0.000
AFLA_119410
Aspergillus flavus
CADAFLAG00012513
N
0.000
AFUA_5G10830
Aspergillus fumigatus
CADAFUAG00006235
N
0.000
An14g03770
Aspergillus niger
CADANGAG00011313
N
0.000
ANIA_04721
Aspergillus nidulans
CADANIAG00005708
N
0.000
AO090010000458
Aspergillus oryzae
CADAORAG00004519
N
0.000
ATEG_07640
Aspergillus terreus
CADATEAG00000474
N
0.000
BDBG_08912
Blastomyces dermatitidis
BDBG_08912
N
0.000
HCAG_00961
Histoplasma capsulatum
HCAG_00961
N
0.000
PABG_04784
Paracoccidioides brasiliensis
PABG_04784
N
0.000
Pc21g10420
Penicillium chrysogenum
Pc21g10420
N
0.000
PMAA_073440
Penicillium marneffei
PMAA_073440
N
0.000
PTTG_03386
Puccinia triticina
PTTG_03386
N
0.000