CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pc21g10420
(
Penicillium chrysogenum
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
Pc21g10420
T61640_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pc21g10420.t1
S1
263
333
KIYDGTVTGVKDFGAFVNLKGVRGKVDGLVHVSAMQEGARVNHPSDLVSRGQPVKVKVASIDGTRIGLSMK
Links
Other
S1
family RBPs
Other
Penicillium chrysogenum
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PMAA_073440
Penicillium marneffei
PMAA_073440
N
0.915
ANIA_04721
Aspergillus nidulans
CADANIAG00005708
N
0.903
An14g03770
Aspergillus niger
CADANGAG00011313
N
0.889
PABG_04784
Paracoccidioides brasiliensis
PABG_04784
N
0.875
AFUA_5G10830
Aspergillus fumigatus
CADAFUAG00006235
N
0.867
ACLA_013700
Aspergillus clavatus
CADACLAG00000914
N
0.867
AFLA_119410
Aspergillus flavus
CADAFLAG00012513
N
0.865
AO090010000458
Aspergillus oryzae
CADAORAG00004519
N
0.865
NFIA_076400
Neosartorya fischeri
CADNFIAG00008573
N
0.853
HCAG_00961
Histoplasma capsulatum
HCAG_00961
N
0.847
BDBG_08912
Blastomyces dermatitidis
BDBG_08912
N
0.847
ATEG_07640
Aspergillus terreus
CADATEAG00000474
N
0.840
CPSG_07949
Coccidioides posadasii
CPSG_07949
N
0.816
UREG_00720
Uncinocarpus reesii
UREG_00720
N
0.816
TRV_06617
Trichophyton verrucosum
TRV_06617
N
0.813
TESG_05437
Trichophyton tonsurans
TESG_05437
N
0.813
MGYG_03171
Microsporum gypseum
MGYG_03171
N
0.813
ARB_03894
Arthroderma benhamiae
ARB_03894
N
0.813
CIMG_00743
Coccidioides immitis
CIMG_00743
N
0.803
TERG_04997
Trichophyton rubrum
TERG_04997
N
0.800
BC1G_13853
Botrytis cinerea
BC1G_13853
N
0.781
SS1G_13866
Sclerotinia sclerotiorum
SS1G_13866
N
0.776
MGG_08807
Magnaporthe oryzae
MGG_08807
N
0.753
PGTG_09681
Puccinia graminis
PGTG_09681
N
0.750
fgenesh1_pg.C_chr_9000466
Mycosphaerella graminicola
fgenesh1_pg.C_chr_9000466
N
0.750
PTTG_03386
Puccinia triticina
PTTG_03386
N
0.750
EAT83861.1
Phaeosphaeria nodorum
EAT83861.1
N
0.736
estExt_fgenesh1_pg.C_20624
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_20624
N
0.736
SNOG_08693
Stagonospora nodorum
SNOG_08693
N
0.736
estExt_fgenesh1_pg.C_30380
Cryphonectria parasitica
estExt_fgenesh1_pg.C_30380
N
0.724
gw1.1.76.1
Myceliophthora thermophila
gw1.1.76.1
N
0.711
VDAG_07985
Verticillium dahliae
VDAG_07985
N
0.711
PTRG_08962
Pyrenophora tritici repentis
PTRG_08962
N
0.708