CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BICC1
(
Taeniopygia guttata
)
KH,SAM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00536 (SAM_1)
IPR018111
IPR021129
ENSTGUG00000005584
T22516_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTGUP00000005765
KH
7
59
GKSGEDFFQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKENVKEAKEKI
ENSTGUP00000005765
KH
71
136
TLKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNNQAEKSNQVSIAGQPAGVESARVRI
ENSTGUP00000005765
KH
161
205
NSPTIQHVCQTYNISVSFKQRSRMYGATVIVRGSQNNTSAVKEGT
ENSTGUP00000005765
KH
223
285
STQLDIAAQHHLFMMGRNGSNIKHIMQRTGAQIHFPDPSNPQKKSTVYLQGTIESVCLARQYL
ENSTGUP00000005765
SAM
813
872
GSDLPELFSKLGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISELN
Links
Other
KH,SAM
family RBPs
Other
Taeniopygia guttata
RBPs
30 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GSPATP00016520001
Paramecium tetraurelia
GSPATP00016520001
N
0.000