CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma12g06430.1
(
Glycine max
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
Glyma12g06430.1
T24889_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma12g06430.1
PUF
697
731
EIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVY
Glyma12g06430.1
PUF
733
766
EIMPHALALMTDVFGNYVVQKFFEHGLASQKREL
Glyma12g06430.1
PUF
769
803
KLLGHVLALSLQMYGCRVIQKAIEVVDLDQKIEMV
Glyma12g06430.1
PUF
805
839
ELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIV
Glyma12g06430.1
PUF
841
876
TFFDQVVTLSTHPYGCRVIQRVLEHCKDPTTQQKVM
Glyma12g06430.1
PUF
878
912
EILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSII
Glyma12g06430.1
PUF
914
948
ELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLV
Glyma12g06430.1
PUF
961
990
LQAMMKDQFANYVVQKVLETCDDQQRELIL
Links
Other
PUF
family RBPs
Other
Glycine max
RBPs
78 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AGAP005292
Anopheles gambiae
AGAP005292
N
0.000
CG34354
Drosophila melanogaster
FBgn0085383
N
0.000
GD21365
Drosophila simulans
FBgn0192802
N
0.000
GF18877
Drosophila ananassae
FBgn0095891
N
0.000
GG11590
Drosophila erecta
FBgn0103887
N
0.000
GH17442
Drosophila grimshawi
FBgn0124912
N
0.000
GI22767
Drosophila mojavensis
FBgn0145494
N
0.000
GJ22770
Drosophila virilis
FBgn0209874
N
0.000
GK22643
Drosophila willistoni
FBgn0224620
N
0.000
GL23650
Drosophila persimilis
FBgn0161240
N
0.000