CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma12g06430.1
(
Glycine max
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
Glyma12g06430.1
T24889_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma12g06430.1
PUF
697
731
EIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVY
Glyma12g06430.1
PUF
733
766
EIMPHALALMTDVFGNYVVQKFFEHGLASQKREL
Glyma12g06430.1
PUF
769
803
KLLGHVLALSLQMYGCRVIQKAIEVVDLDQKIEMV
Glyma12g06430.1
PUF
805
839
ELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIV
Glyma12g06430.1
PUF
841
876
TFFDQVVTLSTHPYGCRVIQRVLEHCKDPTTQQKVM
Glyma12g06430.1
PUF
878
912
EILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSII
Glyma12g06430.1
PUF
914
948
ELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLV
Glyma12g06430.1
PUF
961
990
LQAMMKDQFANYVVQKVLETCDDQQRELIL
Links
Other
PUF
family RBPs
Other
Glycine max
RBPs
78 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
13113.t00005
Oryza sativa
13113.t00005
N
0.000
LOC_Os01g29070
Oryza sativa
LOC_Os01g29070
N
0.000
LOC_Os01g35400
Oryza sativa
LOC_Os01g35400
N
0.000
LOC_Os02g23828
Oryza sativa
LOC_Os02g23828
N
0.000
LOC_Os02g25390
Oryza sativa
LOC_Os02g25390
N
0.000
LOC_Os03g23230
Oryza sativa
LOC_Os03g23230
N
0.000
LOC_Os03g32970
Oryza sativa
LOC_Os03g32970
N
0.000
LOC_Os04g05240
Oryza sativa
LOC_Os04g05240
N
0.000
LOC_Os04g06402
Oryza sativa
LOC_Os04g06402
N
0.000
LOC_Os04g14050
Oryza sativa
LOC_Os04g14050
N
0.000
LOC_Os04g53900
Oryza sativa
LOC_Os04g53900
N
0.000
LOC_Os05g08270
Oryza sativa
LOC_Os05g08270
N
0.000
LOC_Os05g17580
Oryza sativa
LOC_Os05g17580
N
0.000
LOC_Os05g17700
Oryza sativa
LOC_Os05g17700
N
0.000
LOC_Os05g17720
Oryza sativa
LOC_Os05g17720
N
0.000
LOC_Os05g18030
Oryza sativa
LOC_Os05g18030
N
0.000
LOC_Os05g18060
Oryza sativa
LOC_Os05g18060
N
0.000
LOC_Os05g19430
Oryza sativa
LOC_Os05g19430
N
0.000
LOC_Os05g20800
Oryza sativa
LOC_Os05g20800
N
0.000
LOC_Os05g22850
Oryza sativa
LOC_Os05g22850
N
0.000
LOC_Os05g26300
Oryza sativa
LOC_Os05g26300
N
0.000
LOC_Os06g18730
Oryza sativa
LOC_Os06g18730
N
0.000
LOC_Os06g31750
Oryza sativa
LOC_Os06g31750
N
0.000
LOC_Os07g17880
Oryza sativa
LOC_Os07g17880
N
0.000
LOC_Os07g24720
Oryza sativa
LOC_Os07g24720
N
0.000
LOC_Os08g12110
Oryza sativa
LOC_Os08g12110
N
0.000
LOC_Os08g20952
Oryza sativa
LOC_Os08g20952
N
0.000
LOC_Os08g22940
Oryza sativa
LOC_Os08g22940
N
0.000
LOC_Os08g24080
Oryza sativa
LOC_Os08g24080
N
0.000
LOC_Os08g24100
Oryza sativa
LOC_Os08g24100
N
0.000
LOC_Os08g27380
Oryza sativa
LOC_Os08g27380
N
0.000
LOC_Os08g45260
Oryza sativa
LOC_Os08g45260
N
0.000
LOC_Os09g06870
Oryza sativa
LOC_Os09g06870
N
0.000
LOC_Os09g09020
Oryza sativa
LOC_Os09g09020
N
0.000
LOC_Os09g09080
Oryza sativa
LOC_Os09g09080
N
0.000
LOC_Os09g13140
Oryza sativa
LOC_Os09g13140
N
0.000
LOC_Os10g16780
Oryza sativa
LOC_Os10g16780
N
0.000
LOC_Os10g17210
Oryza sativa
LOC_Os10g17210
N
0.000
LOC_Os10g18730
Oryza sativa
LOC_Os10g18730
N
0.000
LOC_Os11g35170
Oryza sativa
LOC_Os11g35170
N
0.000
LOC_Os12g18050
Oryza sativa
LOC_Os12g18050
N
0.000
LOC_Os12g25600
Oryza sativa
LOC_Os12g25600
N
0.000
LOC_Os12g33800
Oryza sativa
LOC_Os12g33800
N
0.000