CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fust-1
(
Caenorhabditis elegans
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
C27H5.3
T25483_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
C27H5.3.1
RRM
203
277
VFVQGISTTANEAYIADVFSTCGDIAKNDRGPRIKIYTDRNTGEPKGECMITFVDASAAQQAITMYNGQPFPGGS
C27H5.3.1
RanBP ZF
396
425
RKNDWPCEQCGNSNFAFRRECNQCQAPRPD
C27H5.3.2
RRM
203
277
VFVQGISTTANEAYIADVFSTCGDIAKNDRGPRIKIYTDRNTGEPKGECMITFVDASAAQQAITMYNGQPFPGGS
C27H5.3.2
RanBP ZF
396
425
RKNDWPCEQCGNSNFAFRRECNQCQAPRPD
Links
Other
RanBP ZF,RRM
family RBPs
Other
Caenorhabditis elegans
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBG13075
Caenorhabditis briggsae
CBG13075
N
0.962
CBN09099
Caenorhabditis brenneri
CBN09099
N
0.933
CJA04202
Caenorhabditis japonica
CJA04202
N
0.934
CRE26445
Caenorhabditis remanei
CRE26445
N
0.962