CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CJA04202
(
Caenorhabditis japonica
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
CJA04202
T25502_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA04202
RRM
249
324
VFVQGISTTANEAYIADVFSTCGDIAKNDRGPRIKIYTDRNTGEPKGECMITFSDASSAQQAITMYHGQPFPGSSS
CJA04202
RanBP ZF
443
472
RKNDWPCEQCGNSNFAFRKECNQCQAPRAD
Links
Other
RanBP ZF,RRM
family RBPs
Other
Caenorhabditis japonica
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fust-1
Caenorhabditis elegans
C27H5.3
N
0.934
CRE26445
Caenorhabditis remanei
CRE26445
N
0.906
CBG13075
Caenorhabditis briggsae
CBG13075
N
0.896
CBN09099
Caenorhabditis brenneri
CBN09099
N
0.877