CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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VDBG_05689
(
Verticillium albo atrum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
VDBG_05689
T31463_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
VDBG_05689T0
RRM
172
242
IVIKNIPFAVRRETLAGLMLEMHLPQPYAFNYHFDNGVFRGLAFANFSSPDDTKIVIEAMNGMDVHGRKLR
Links
Other
RRM
family RBPs
Other
Verticillium albo atrum
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBG05418
Caenorhabditis briggsae
CBG05418
N
0.000
CBN00783
Caenorhabditis brenneri
CBN00783
N
0.000
CBN09794
Caenorhabditis brenneri
CBN09794
N
0.000
CRE30215
Caenorhabditis remanei
CRE30215
N
0.000
CRE30216
Caenorhabditis remanei
CRE30216
N
0.000
CRE30217
Caenorhabditis remanei
CRE30217
N
0.000
CRE30229
Caenorhabditis remanei
CRE30229
N
0.000
EEED8
Caenorhabditis elegans
EEED8
N
0.000