CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CBG05418
(
Caenorhabditis briggsae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CBG05418
T33885_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG05418
RRM
51
120
VFVGNVDFGSTIAEIQDHFKGCGVIVRTTIPKDKFTKRQKNFAYIEFESSESIENALVMNGSLFRARQIV
Links
Other
RRM
family RBPs
Other
Caenorhabditis briggsae
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBG05376
Caenorhabditis briggsae
CBG05376
N
0.829
CBG05375
Caenorhabditis briggsae
CBG05375
N
0.829
EEED8
Caenorhabditis elegans
EEED8
N
0.814
CRE30217
Caenorhabditis remanei
CRE30217
N
0.800
CRE30229
Caenorhabditis remanei
CRE30229
N
0.743
CRE30215
Caenorhabditis remanei
CRE30215
N
0.743
CRE30220
Caenorhabditis remanei
CRE30220
N
0.743
CRE30216
Caenorhabditis remanei
CRE30216
N
0.729
CBN09841
Caenorhabditis brenneri
CBN09841
N
0.729
CRE12048
Caenorhabditis remanei
CRE12048
N
0.714
CBN00783
Caenorhabditis brenneri
CBN00783
N
0.700
CRE01432
Caenorhabditis remanei
CRE01432
N
0.700