CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI2G58690
(
Brachypodium distachyon
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BRADI2G58690
T33207_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI2G58690.1
RRM
39
109
LFVGGLSWGTNDGSLKEAFSSFGEVYEARVITDRETGRSRGFGFVEFSNEEDAKKAASSMDGQELDGRSVR
Links
Other
RRM
family RBPs
Other
Brachypodium distachyon
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29629.m001443
Ricinus communis
29629.m001443
N
0.704
BGIOSIBCE004733
Oryza indica
BGIOSIBCE004733
N
0.746
cassava24319.valid.m1
Manihot esculenta
cassava24319.valid.m1
N
0.718
cassava24320.valid.m1
Manihot esculenta
cassava24320.valid.m1
N
0.718
cassava7020.valid.m1
Manihot esculenta
cassava7020.valid.m1
N
0.718
GR-RBP4
Arabidopsis thaliana
AT3G23830-TAIR-G
N
0.718
GRMZM2G042118
Zea mays
GRMZM2G042118
N
0.718
GSVIVG00021024001
Vitis vinifera
GSVIVG00021024001
N
0.704
LOC_Os01g68790
Oryza sativa
LOC_Os01g68790
N
0.746
MDP0000216169
Malus x domestica
MDP0000216169
N
0.746