CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AFUA_2G16400
(
Aspergillus fumigatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADAFUAG00004230
T33494_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADAFUAP00004230
RRM
74
141
HVGNLSFEATSADINDLFAGCGVTNVRIVEDKLTRSPKGFGYVEFETVDGLRRALDLSGTTLQGRAIR
Links
Other
RRM
family RBPs
Other
Aspergillus fumigatus
RBPs
28 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB04189.1
Alternaria brassicicola
AB04189.1
N
0.735
ACLA_075320
Aspergillus clavatus
CADACLAG00006833
N
0.926
AFLA_003440
Aspergillus flavus
CADAFLAG00010410
N
0.824
An15g06790
Aspergillus niger
CADANGAG00012358
N
0.868
ANIA_07350
Aspergillus nidulans
CADANIAG00000083
N
0.838
AO090102000222
Aspergillus oryzae
CADAORAG00009578
N
0.824
ARB_03225
Arthroderma benhamiae
ARB_03225
N
0.735
ATEG_02298
Aspergillus terreus
CADATEAG00000182
N
0.912
BDBG_02754
Blastomyces dermatitidis
BDBG_02754
N
0.735
CIMG_09493
Coccidioides immitis
CIMG_09493
N
0.706
CPSG_04053
Coccidioides posadasii
CPSG_04053
N
0.721
EAT82319.2
Phaeosphaeria nodorum
EAT82319.2
N
0.721
estExt_fgenesh1_pg.C_180055
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_180055
N
0.750
fgenesh1_pg.00815_#_18
Aspergillus carbonarius
fgenesh1_pg.00815_#_18
N
0.838
HCAG_06478
Histoplasma capsulatum
HCAG_06478
N
0.750
MCYG_03836
Microsporum canis
MCYG_03836
N
0.750
MGYG_07815
Microsporum gypseum
MGYG_07815
N
0.750
NFIA_091670
Neosartorya fischeri
CADNFIAG00006889
N
0.956
PABG_02641
Paracoccidioides brasiliensis
PABG_02641
N
0.706
Pc21g01490
Penicillium chrysogenum
Pc21g01490
N
0.754
PMAA_034530
Penicillium marneffei
PMAA_034530
N
0.765
PTRG_05566
Pyrenophora tritici repentis
PTRG_05566
N
0.735
SNOG_09984
Stagonospora nodorum
SNOG_09984
N
0.721
TEQG_03246
Trichophyton equinum
TEQG_03246
N
0.735
TERG_05285
Trichophyton rubrum
TERG_05285
N
0.735
TESG_04321
Trichophyton tonsurans
TESG_04321
N
0.735
TRV_02454
Trichophyton verrucosum
TRV_02454
N
0.721
UREG_04821
Uncinocarpus reesii
UREG_04821
N
0.735