CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC100391077
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000005589
T35527_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000010201
RRM
40
110
LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIK
ENSCJAP00000010201
RRM
126
194
LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAA
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BC1G_04408
Botrytis cinerea
BC1G_04408
N
0.000
BC1G_04890
Botrytis cinerea
BC1G_04890
N
0.000
BC1G_06254
Botrytis cinerea
BC1G_06254
N
0.000
BC1G_07532
Botrytis cinerea
BC1G_07532
N
0.000
BC1G_08449
Botrytis cinerea
BC1G_08449
N
0.000
BC1G_08572
Botrytis cinerea
BC1G_08572
N
0.000
BC1G_09043
Botrytis cinerea
BC1G_09043
N
0.000
BC1G_09712
Botrytis cinerea
BC1G_09712
N
0.000
BC1G_12842
Botrytis cinerea
BC1G_12842
N
0.000
BC1G_13225
Botrytis cinerea
BC1G_13225
N
0.000
BC1G_15283
Botrytis cinerea
BC1G_15283
N
0.000
BC1G_15284
Botrytis cinerea
BC1G_15284
N
0.000
BC1G_15972
Botrytis cinerea
BC1G_15972
N
0.000
BC1G_16148
Botrytis cinerea
BC1G_16148
N
0.000
BC1G_16215
Botrytis cinerea
BC1G_16215
N
0.000
CHGG_00235
Chaetomium globosum
CHGG_00235
N
0.000
CHGG_06816
Chaetomium globosum
CHGG_06816
N
0.000
SS1G_03724
Sclerotinia sclerotiorum
SS1G_03724
N
0.000
SS1G_04258
Sclerotinia sclerotiorum
SS1G_04258
N
0.000
SS1G_05465
Sclerotinia sclerotiorum
SS1G_05465
N
0.000
SS1G_06437
Sclerotinia sclerotiorum
SS1G_06437
N
0.000
SS1G_09531
Sclerotinia sclerotiorum
SS1G_09531
N
0.000
SS1G_14025
Sclerotinia sclerotiorum
SS1G_14025
N
0.000
SS1G_14517
Sclerotinia sclerotiorum
SS1G_14517
N
0.000