CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
LOC100401730
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000018361
T35659_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RALY
M150_0.6
Homo sapiens
UUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00159
1.000
HNRNPC
M025_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00025
0.781
HNRNPCL1
M158_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00167
0.734
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000034059
RRM
23
86
VFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLD
ENSCJAP00000034067
RRM
23
86
VFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLD
ENSCJAP00000042753
RRM
23
86
VFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLD
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
131 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
10842_YIL079C
Saccharomyces mikatae
10842_YIL079C
N
0.000
10955_YIL079C
Saccharomyces paradoxus
10955_YIL079C
N
0.000
11653_YIL079C
Saccharomyces bayanus
11653_YIL079C
N
0.000
2573_YDL175C
Saccharomyces mikatae
2573_YDL175C
N
0.000
3115_YDL175C
Saccharomyces paradoxus
3115_YDL175C
N
0.000
AIR2
Saccharomyces cerevisiae
YDL175C
N
0.000
CAGL0J09460g
Candida glabrata
CAGL0J09460g
N
0.000
KLLA0F05896g
Kluyveromyces lactis
KLLA0F05896g
N
0.000
KLTH0A05214g
Kluyveromyces thermotolerans
KLTH0A05214g
N
0.000
KLTH0G17424g
Kluyveromyces thermotolerans
KLTH0G17424g
N
0.000
Kwal_1436
Kluyveromyces waltii
Kwal_1436
N
0.000
Kwal_5985
Kluyveromyces waltii
Kwal_5985
N
0.000
SAKL0F09636g
Lachancea kluyveri
SAKL0F09636g
N
0.000
Scas_Contig704.11
Saccharomyces castellii
Scas_Contig704.11
N
0.000
Skud_Contig2045.4
Saccharomyces kudriavzevii
Skud_Contig2045.4
N
0.000
ZYRO0C09108g
Zygosaccharomyces rouxii
ZYRO0C09108g
N
0.000