LOC100401730 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000018361 T35659_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		1.000
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.781
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.734
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000034059 RRM 23 86
ENSCJAP00000034067 RRM 23 86
ENSCJAP00000042753 RRM 23 86

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

131 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA60937 Xenopus laevis AAA60937 I 0.750
AAH41534 Xenopus laevis AAH41534 I 0.766
AAH71084 Xenopus laevis AAH71084 I 0.750
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.969
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.766
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.781
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.781
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.781
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 0.781
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.766
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.781
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.766
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.719
ENSCJAG00000009449 Callithrix jacchus ENSCJAG00000009449 I 0.984
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.766
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.766
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.781
ENSETEG00000001919 Echinops telfairi ENSETEG00000001919 I 0.953
ENSGACG00000017772 Gasterosteus aculeatus ENSGACG00000017772 I 0.719
ENSGACG00000018932 Gasterosteus aculeatus ENSGACG00000018932 I 0.703
ENSGGOG00000003521 Gorilla gorilla ENSGGOG00000003521 I 0.719
ENSGGOG00000026816 Gorilla gorilla ENSGGOG00000026816 I 0.703
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.781
ENSMMUG00000012973 Macaca mulatta ENSMMUG00000012973 I 0.750
ENSMODG00000017619 Monodelphis domestica ENSMODG00000017619 I 0.703
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.766
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.766
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.781
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.766
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.766
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.812
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.750
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.781
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 1.000
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 0.797
ENSSARG00000002763 Sorex araneus ENSSARG00000002763 I 0.938
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.969
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.969
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.766
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.781
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.750
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.781
fgenesh2_pg.scaffold_6000171 Branchiostoma floridae fgenesh2_pg.scaffold_6000171 I 0.703
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.781
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.781
HNRNPC Takifugu rubripes ENSTRUG00000002153 I 0.766
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.781
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.781
HNRNPC Sorex araneus ENSSARG00000003711 I 0.781
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.781
HNRNPC Homo sapiens ENSG00000092199 D 0.781
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.781
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.781
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.766
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.766
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.781
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.781
HNRNPCL1 Homo sapiens ENSG00000179172 D 0.734
HNRNPCL1 Procavia capensis ENSPCAG00000003025 I 0.719
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.781
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.781
LOC100054239 Equus caballus ENSECAG00000012357 I 0.969
LOC100059269 Equus caballus ENSECAG00000017645 I 0.781
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.781
LOC770541 Gallus gallus ENSGALG00000015797 I 0.766
P19600 Xenopus laevis P19600 I 0.750
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.781
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.953
RALY Pteropus vampyrus ENSPVAG00000015827 I 0.938
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.969
RALY Pan troglodytes ENSPTRG00000013410 I 1.000
Raly Rattus norvegicus ENSRNOG00000017405 I 0.969
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.969
RALY Tupaia belangeri ENSTBEG00000009812 I 0.938
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.953
RALY Tarsius syrichta ENSTSYG00000002598 I 0.953
RALY Vicugna pacos ENSVPAG00000000373 I 0.969
RALY Tursiops truncatus ENSTTRG00000006590 I 0.969
RALY Anolis carolinensis ENSACAG00000008983 I 0.953
raly Xenopus tropicalis ENSXETG00000019514 I 0.906
RALY Canis familiaris ENSCAFG00000007490 I 0.969
RALY Loxodonta africana ENSLAFG00000000321 I 0.969
RALY Ochotona princeps ENSOPRG00000008423 I 0.953
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.984
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.953
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.969
RALY Macaca mulatta ENSMMUG00000018093 I 1.000
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.969
RALY Myotis lucifugus ENSMLUG00000005330 I 0.969
Raly Mus musculus ENSMUSG00000027593 I 0.969
Raly Dipodomys ordii ENSDORG00000013400 I 0.969
raly Danio rerio ENSDARG00000059972 I 0.922
RALY Gorilla gorilla ENSGGOG00000022709 I 1.000
RALY Gasterosteus aculeatus ENSGACG00000003636 I 0.844
RALY Gallus gallus ENSGALG00000002054 I 0.969
RALY Cavia porcellus ENSCPOG00000000309 I 0.984
RALY Procavia capensis ENSPCAG00000016867 I 0.953
RALY Homo sapiens ENSG00000125970 D 1.000
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.781
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.781
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.781
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.766
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.781
RALYL Vicugna pacos ENSVPAG00000008501 I 0.781
RALYL Gasterosteus aculeatus ENSGACG00000004991 I 0.766
RALYL Echinops telfairi ENSETEG00000014028 I 0.781
RALYL Choloepus hoffmanni ENSCHOG00000013228 I 0.797
ralyl Xenopus tropicalis ENSXETG00000017729 I 0.734
RALYL Takifugu rubripes ENSTRUG00000003829 I 0.734
RALYL Macaca mulatta ENSMMUG00000031878 I 0.797
RALYL Pan troglodytes ENSPTRG00000020381 I 0.797
RALYL Pteropus vampyrus ENSPVAG00000010821 I 0.797
RALYL Oryzias latipes ENSORLG00000017934 I 0.750
RALYL Oryzias latipes ENSORLG00000012719 I 0.766
RALYL Sorex araneus ENSSARG00000002374 I 0.781
RALYL Microcebus murinus ENSMICG00000005558 I 0.781
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.766
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.781
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.766
Ralyl Mus musculus ENSMUSG00000039717 I 0.797
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.734
RALYL Spermophilus tridecemlineatus ENSSTOG00000012583 I 0.734
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.781
XM_001153149.1 Pan troglodytes ENSPTRG00000034109 I 0.734
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.766
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.938
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.797
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.781
zgc:55701 Danio rerio ENSDARG00000053810 I 0.719
zgc:55733 Danio rerio ENSDARG00000022579 I 0.750