LOC100401730 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000018361 T35659_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		1.000
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.781
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.734
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000034059 RRM 23 86
ENSCJAP00000034067 RRM 23 86
ENSCJAP00000042753 RRM 23 86

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

131 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
10842_YIL079C Saccharomyces mikatae 10842_YIL079C N 0.000
10955_YIL079C Saccharomyces paradoxus 10955_YIL079C N 0.000
11653_YIL079C Saccharomyces bayanus 11653_YIL079C N 0.000
2573_YDL175C Saccharomyces mikatae 2573_YDL175C N 0.000
3115_YDL175C Saccharomyces paradoxus 3115_YDL175C N 0.000
AIR2 Saccharomyces cerevisiae YDL175C N 0.000
CAGL0J09460g Candida glabrata CAGL0J09460g N 0.000
KLLA0F05896g Kluyveromyces lactis KLLA0F05896g N 0.000
KLTH0A05214g Kluyveromyces thermotolerans KLTH0A05214g N 0.000
KLTH0G17424g Kluyveromyces thermotolerans KLTH0G17424g N 0.000
Kwal_1436 Kluyveromyces waltii Kwal_1436 N 0.000
Kwal_5985 Kluyveromyces waltii Kwal_5985 N 0.000
SAKL0F09636g Lachancea kluyveri SAKL0F09636g N 0.000
Scas_Contig704.11 Saccharomyces castellii Scas_Contig704.11 N 0.000
Skud_Contig2045.4 Saccharomyces kudriavzevii Skud_Contig2045.4 N 0.000
ZYRO0C09108g Zygosaccharomyces rouxii ZYRO0C09108g N 0.000