3115_YDL175C (Saccharomyces paradoxus)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 3115_YDL175C T15195_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
3115_YDL175C CCHC ZF 61 78
3115_YDL175C CCHC ZF 99 116
3115_YDL175C CCHC ZF 162 179

Links

Other CCHC ZF family RBPs
Other Saccharomyces paradoxus RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AIR2 Saccharomyces cerevisiae YDL175C N 1.000
2573_YDL175C Saccharomyces mikatae 2573_YDL175C N 0.963
Skud_Contig2045.4 Saccharomyces kudriavzevii Skud_Contig2045.4 N 0.944
SAKL0F09636g Lachancea kluyveri SAKL0F09636g N 0.815
Scas_Contig704.11 Saccharomyces castellii Scas_Contig704.11 N 0.778
10842_YIL079C Saccharomyces mikatae 10842_YIL079C N 0.778
KLLA0F05896g Kluyveromyces lactis KLLA0F05896g N 0.778
CAGL0J09460g Candida glabrata CAGL0J09460g N 0.778
11653_YIL079C Saccharomyces bayanus 11653_YIL079C N 0.759
10955_YIL079C Saccharomyces paradoxus 10955_YIL079C N 0.759
KLTH0G17424g Kluyveromyces thermotolerans KLTH0G17424g N 0.759
ZYRO0C09108g Zygosaccharomyces rouxii ZYRO0C09108g N 0.759
Kwal_1436 Kluyveromyces waltii Kwal_1436 N 0.759
KLTH0A05214g Kluyveromyces thermotolerans KLTH0A05214g N 0.741
AIR1 Saccharomyces cerevisiae YIL079C N 0.741