A1CF (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000009807 T35819_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000003765
M244_0.6 		Gallus gallus DUAAUUV RNAcompete
Ray et al.(2013)
RNCMPT00291 		0.941
A1CF
M001_0.6 		Homo sapiens WUAAUUR RNAcompete
Ray et al.(2013)
RNCMPT00001 		0.936
ENSXETG00000012802
M235_0.6 		Xenopus tropicalis GAUGAWH RNAcompete
Ray et al.(2013)
RNCMPT00280 		0.709
RBM46
M052_0.6 		Homo sapiens RAUSAWD RNAcompete
Ray et al.(2013)
RNCMPT00054 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000008803 RRM 58 127
ENSCPOP00000008803 RRM 138 204
ENSCPOP00000008803 RRM 233 297

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SPRG_04826 Saprolegnia parasitica SPRG_04826 N 0.000