A1CF (Homo sapiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSG00000148584 T37276_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A1CF
M001_0.6		 Homo sapiens WUAAUUR RNAcompete
Ray et al.(2013)
RNCMPT00001 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000003765
M244_0.6 		Gallus gallus DUAAUUV RNAcompete
Ray et al.(2013)
RNCMPT00291 		0.888
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000282641 RRM 58 127
ENSP00000282641 RRM 138 203
ENSP00000282641 RRM 233 297
ENSP00000363105 RRM 58 127
ENSP00000363105 RRM 138 203
ENSP00000363105 RRM 233 297
ENSP00000363107 RRM 66 135
ENSP00000363107 RRM 146 211
ENSP00000363107 RRM 241 305
ENSP00000363109 RRM 58 127
ENSP00000363109 RRM 138 203
ENSP00000363109 RRM 233 297
ENSP00000363113 RRM 58 127
ENSP00000363113 RRM 138 203
ENSP00000363113 RRM 233 297
ENSP00000378867 RRM 41 110
ENSP00000378867 RRM 121 186
ENSP00000378867 RRM 216 280
ENSP00000378868 RRM 66 135
ENSP00000378868 RRM 146 211
ENSP00000378868 RRM 241 305
ENSP00000378873 RRM 58 127
ENSP00000378873 RRM 138 200
ENSP00000378873 RRM 202 242
ENSP00000397953 RRM 58 127
ENSP00000397953 RRM 138 199

Links

Other RRM family RBPs
Other Homo sapiens RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A1CF Pan troglodytes ENSPTRG00000002508 I 1.000
A1CF Sorex araneus ENSSARG00000005940 I 0.983
A1CF Myotis lucifugus ENSMLUG00000016071 N 0.970
A1CF Gorilla gorilla ENSGGOG00000009670 I 0.965
ENSPPYG00000002819 Pongo pygmaeus ENSPPYG00000002819 I 0.941
A1CF Macaca mulatta ENSMMUG00000007077 I 0.941
A1CF Callithrix jacchus ENSCJAG00000005045 I 0.941
A1CF Loxodonta africana ENSLAFG00000015462 I 0.936
A1CF Cavia porcellus ENSCPOG00000009807 I 0.936
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.936
A1CF Choloepus hoffmanni ENSCHOG00000009089 I 0.936
A1CF Sus scrofa ENSSSCG00000010431 I 0.936
A1CF Echinops telfairi ENSETEG00000012527 I 0.936
A1cf Rattus norvegicus ENSRNOG00000033195 I 0.931
A1CF Equus caballus ENSECAG00000010424 I 0.931
A1CF Bos taurus ENSBTAG00000021195 I 0.931
A1cf Mus musculus ENSMUSG00000052595 I 0.922
A1CF Oryctolagus cuniculus ENSOCUG00000011587 I 0.922
Ame_R002153 Ailuropoda melanoleuca Ame_R002153 I 0.912
A1CF Ornithorhynchus anatinus ENSOANG00000007360 I 0.902
A1CF Taeniopygia guttata ENSTGUG00000005090 I 0.897
A1CF Meleagris gallopavo ENSMGAG00000001507 I 0.888
ENSGALG00000003765 Gallus gallus ENSGALG00000003765 D 0.888
A1CF Canis familiaris ENSCAFG00000015581 I 0.887
A1CF Macropus eugenii ENSMEUG00000015909 I 0.877
A1CF Monodelphis domestica ENSMODG00000016478 I 0.877
A1CF Anolis carolinensis ENSACAG00000015269 I 0.873
A1CF Ochotona princeps ENSOPRG00000010667 I 0.872
a1cf Danio rerio ENSDARG00000002968 I 0.848
A1CF Dasypus novemcinctus ENSDNOG00000002829 I 0.841
A1CF Oryzias latipes ENSORLG00000013342 I 0.837
A1CF Vicugna pacos ENSVPAG00000006130 I 0.828
A1CF Gasterosteus aculeatus ENSGACG00000010241 I 0.828
A1cf Dipodomys ordii ENSDORG00000016548 I 0.828
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.824
AAH74127 Xenopus laevis AAH74127 I 0.824
A1CF Spermophilus tridecemlineatus ENSSTOG00000005763 N 0.820
A1CF Tetraodon nigroviridis ENSTNIG00000003580 I 0.816
A1CF Tursiops truncatus ENSTTRG00000013190 I 0.770
A1CF Felis catus ENSFCAG00000011179 I 0.752
ENSCING00000004101 Ciona intestinalis ENSCING00000004101 I 0.750
RBM47 Homo sapiens ENSG00000163694 I 0.737
e_gw.60.130.1 Branchiostoma floridae e_gw.60.130.1 N 0.727
RBM47 Erinaceus europaeus ENSEEUG00000001194 N 0.715
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.709
a1cf Xenopus tropicalis ENSXETG00000006611 I 0.703
A1CF Microcebus murinus ENSMICG00000003377 I 0.701