pabpn1 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000045373 T36161_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.943
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000066721 RRM 100 169
ENSDARP00000100125 RRM 100 169

Links

Other RRM family RBPs
Other Danio rerio RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A4GALT Macaca mulatta ENSMMUG00000010194 N 0.000
A7YW33_BOVIN Bos taurus ENSBTAG00000016511 N 0.000
AAH73024 Xenopus laevis AAH73024 N 0.000
AAH93543 Xenopus laevis AAH93543 N 0.000
Ame_R015324 Ailuropoda melanoleuca Ame_R015324 N 0.000
ENSPPYG00000011899 Pongo pygmaeus ENSPPYG00000011899 N 0.000
LOC100071034 Equus caballus ENSECAG00000018350 N 0.000
LOC100398897 Callithrix jacchus ENSCJAG00000009628 N 0.000
POLDIP3 Pteropus vampyrus ENSPVAG00000014131 N 0.000
Poldip3 Rattus norvegicus ENSRNOG00000022877 N 0.000
POLDIP3 Pan troglodytes ENSPTRG00000014460 N 0.000
POLDIP3 Microcebus murinus ENSMICG00000016706 N 0.000
POLDIP3 Procavia capensis ENSPCAG00000009424 N 0.000
POLDIP3 Sorex araneus ENSSARG00000011587 N 0.000
POLDIP3 Sus scrofa ENSSSCG00000000039 N 0.000
POLDIP3 Spermophilus tridecemlineatus ENSSTOG00000008230 N 0.000
POLDIP3 Tupaia belangeri ENSTBEG00000010978 N 0.000
POLDIP3 Taeniopygia guttata ENSTGUG00000009622 N 0.000
POLDIP3 Tetraodon nigroviridis ENSTNIG00000010841 N 0.000
POLDIP3 Takifugu rubripes ENSTRUG00000006604 N 0.000
POLDIP3 Tarsius syrichta ENSTSYG00000007189 N 0.000
POLDIP3 Tursiops truncatus ENSTTRG00000015129 N 0.000
poldip3 Xenopus tropicalis ENSXETG00000013412 N 0.000
POLDIP3 Oryzias latipes ENSORLG00000014799 N 0.000
POLDIP3 Otolemur garnettii ENSOGAG00000008216 N 0.000
POLDIP3 Oryctolagus cuniculus ENSOCUG00000016133 N 0.000
POLDIP3 Canis familiaris ENSCAFG00000000959 N 0.000
POLDIP3 Cavia porcellus ENSCPOG00000019524 N 0.000
Poldip3 Dipodomys ordii ENSDORG00000006590 N 0.000
POLDIP3 Erinaceus europaeus ENSEEUG00000001290 N 0.000
POLDIP3 Echinops telfairi ENSETEG00000018022 N 0.000
POLDIP3 Felis catus ENSFCAG00000010977 N 0.000
POLDIP3 Homo sapiens ENSG00000100227 N 0.000
POLDIP3 Gasterosteus aculeatus ENSGACG00000007224 N 0.000
POLDIP3 Anolis carolinensis ENSACAG00000003515 N 0.000
POLDIP3 Ornithorhynchus anatinus ENSOANG00000011029 N 0.000
Poldip3 Mus musculus ENSMUSG00000041815 N 0.000
POLDIP3 Monodelphis domestica ENSMODG00000006932 N 0.000
POLDIP3 Myotis lucifugus ENSMLUG00000012408 N 0.000
POLDIP3 Meleagris gallopavo ENSMGAG00000011986 N 0.000
POLDIP3 Macropus eugenii ENSMEUG00000013932 N 0.000
POLDIP3 Loxodonta africana ENSLAFG00000014901 N 0.000
POLDIP3 Gorilla gorilla ENSGGOG00000014961 N 0.000
Q5F4B6_CHICK Gallus gallus ENSGALG00000011863 N 0.000
XP_002197072.1 Taeniopygia guttata ENSTGUG00000013821 N 0.000