CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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POLDIP3
(
Sus scrofa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSSCG00000000039
T41383_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000000041
RRM
281
341
MTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGE
Links
Other
RRM
family RBPs
Other
Sus scrofa
RBPs
44 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100398897
Callithrix jacchus
ENSCJAG00000009628
N
0.984
POLDIP3
Spermophilus tridecemlineatus
ENSSTOG00000008230
N
0.967
POLDIP3
Felis catus
ENSFCAG00000010977
N
0.967
POLDIP3
Ornithorhynchus anatinus
ENSOANG00000011029
N
0.951
A4GALT
Macaca mulatta
ENSMMUG00000010194
N
0.938
POLDIP3
Erinaceus europaeus
ENSEEUG00000001290
N
0.938
LOC100071034
Equus caballus
ENSECAG00000018350
N
0.938
POLDIP3
Pteropus vampyrus
ENSPVAG00000014131
N
0.938
POLDIP3
Pan troglodytes
ENSPTRG00000014460
N
0.938
POLDIP3
Homo sapiens
ENSG00000100227
N
0.938
POLDIP3
Loxodonta africana
ENSLAFG00000014901
N
0.938
POLDIP3
Gorilla gorilla
ENSGGOG00000014961
N
0.938
POLDIP3
Microcebus murinus
ENSMICG00000016706
N
0.938
POLDIP3
Myotis lucifugus
ENSMLUG00000012408
N
0.938
POLDIP3
Cavia porcellus
ENSCPOG00000019524
N
0.938
POLDIP3
Canis familiaris
ENSCAFG00000000959
N
0.938
POLDIP3
Tursiops truncatus
ENSTTRG00000015129
N
0.938
Poldip3
Rattus norvegicus
ENSRNOG00000022877
N
0.938
POLDIP3
Sorex araneus
ENSSARG00000011587
N
0.938
ENSPPYG00000011899
Pongo pygmaeus
ENSPPYG00000011899
N
0.938
POLDIP3
Procavia capensis
ENSPCAG00000009424
N
0.938
Ame_R015324
Ailuropoda melanoleuca
Ame_R015324
N
0.938
A7YW33_BOVIN
Bos taurus
ENSBTAG00000016511
N
0.938
Poldip3
Mus musculus
ENSMUSG00000041815
N
0.938
POLDIP3
Oryctolagus cuniculus
ENSOCUG00000016133
N
0.938
POLDIP3
Meleagris gallopavo
ENSMGAG00000011986
N
0.922
POLDIP3
Monodelphis domestica
ENSMODG00000006932
N
0.922
POLDIP3
Tupaia belangeri
ENSTBEG00000010978
N
0.922
POLDIP3
Macropus eugenii
ENSMEUG00000013932
N
0.922
XP_002197072.1
Taeniopygia guttata
ENSTGUG00000013821
N
0.922
Q5F4B6_CHICK
Gallus gallus
ENSGALG00000011863
N
0.922
POLDIP3
Taeniopygia guttata
ENSTGUG00000009622
N
0.922
POLDIP3
Anolis carolinensis
ENSACAG00000003515
N
0.906
POLDIP3
Otolemur garnettii
ENSOGAG00000008216
N
0.891
AAH93543
Xenopus laevis
AAH93543
N
0.828
AAH73024
Xenopus laevis
AAH73024
N
0.828
poldip3
Xenopus tropicalis
ENSXETG00000013412
N
0.828
POLDIP3
Tetraodon nigroviridis
ENSTNIG00000010841
N
0.812
POLDIP3
Echinops telfairi
ENSETEG00000018022
N
0.812
POLDIP3
Oryzias latipes
ENSORLG00000014799
N
0.812
POLDIP3
Gasterosteus aculeatus
ENSGACG00000007224
N
0.797
POLDIP3
Takifugu rubripes
ENSTRUG00000006604
N
0.797
POLDIP3
Tarsius syrichta
ENSTSYG00000007189
N
0.770
Poldip3
Dipodomys ordii
ENSDORG00000006590
N
0.770