SFPQ (Oryctolagus cuniculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOCUG00000001877 T39603_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		1.000
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		1.000
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.759
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.759
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000001616 RRM 100 164
ENSOCUP00000001616 RRM 174 241

Links

Other RRM family RBPs
Other Oryctolagus cuniculus RBPs

106 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os03g26560 Oryza sativa LOC_Os03g26560 N 0.000
LOC_Os03g33050 Oryza sativa LOC_Os03g33050 N 0.000
LOC_Os04g19410 Oryza sativa LOC_Os04g19410 N 0.000
LOC_Os04g29500 Oryza sativa LOC_Os04g29500 N 0.000
LOC_Os05g17220 Oryza sativa LOC_Os05g17220 N 0.000
LOC_Os05g17240 Oryza sativa LOC_Os05g17240 N 0.000
LOC_Os05g39030 Oryza sativa LOC_Os05g39030 N 0.000
LOC_Os09g04570 Oryza sativa LOC_Os09g04570 N 0.000
LOC_Os12g18180 Oryza sativa LOC_Os12g18180 N 0.000
LOC_Os12g25590 Oryza sativa LOC_Os12g25590 N 0.000