CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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G3BP2
(
Ochotona princeps
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOPRG00000006307
T39970_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
G3BP2
M021_0.6
Homo sapiens
AGGAUDR
RNAcompete
Ray et al.(2013)
RNCMPT00021
1.000
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOPRP00000005782
RRM
301
367
LFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGE
Links
Other
RRM
family RBPs
Other
Ochotona princeps
RBPs
89 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSCJAG00000013830
Callithrix jacchus
ENSCJAG00000013830
I
0.000
ENSSARG00000008946
Sorex araneus
ENSSARG00000008946
I
0.000
Hnrnpa1
Dipodomys ordii
ENSDORG00000010628
I
0.000
HNRNPA2B1
Erinaceus europaeus
ENSEEUG00000014880
N
0.000
HNRNPA3
Erinaceus europaeus
ENSEEUG00000006347
N
0.000