SRSF4 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000000115 T41994_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.744
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.744
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000002979 RRM 4 66
ENSTNIP00000002979 RRM 105 170

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

142 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q9XSS6_CANFA Canis familiaris ENSCAFG00000009289 N 0.000
SFRS4 Gallus gallus ENSGALG00000001411 N 0.736
SFRS4 Taeniopygia guttata ENSTGUG00000000765 N 0.000
SRSF4 Canis familiaris ENSCAFG00000011669 N 0.705
SRSF4 Choloepus hoffmanni ENSCHOG00000013858 N 0.000
SRSF4 Equus caballus ENSECAG00000021350 N 0.000
SRSF4 Microcebus murinus ENSMICG00000008965 N 0.000
SRSF4 Ornithorhynchus anatinus ENSOANG00000015169 N 0.000
SRSF4 Spermophilus tridecemlineatus ENSSTOG00000015908 N 0.000