SRSF4 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000000115 T41994_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.744
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.744
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000002979 RRM 4 66
ENSTNIP00000002979 RRM 105 170

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

142 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
62194 Helobdella robusta 62194 I 0.729
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.729
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.729
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.938
AAH44085 Xenopus laevis AAH44085 I 0.721
AAH44265 Xenopus laevis AAH44265 I 0.814
AAH46668 Xenopus laevis AAH46668 I 0.829
AAH71160 Xenopus laevis AAH71160 I 0.736
AGAP004592 Anopheles gambiae AGAP004592 I 0.744
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.736
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.729
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.938
B52 Drosophila melanogaster FBgn0004587 D 0.744
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.721
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.760
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.760
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.721
ENSACAG00000004096 Anolis carolinensis ENSACAG00000004096 N 0.729
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.713
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.760
ENSCING00000011362 Ciona intestinalis ENSCING00000011362 N 0.729
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.760
ENSCJAG00000010895 Callithrix jacchus ENSCJAG00000010895 N 0.868
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.868
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.736
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.729
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.729
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.938
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.729
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.853
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.713
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.760
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.822
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.760
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.767
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.721
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.744
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.736
GF17608 Drosophila ananassae FBgn0094626 I 0.744
GH18528 Drosophila grimshawi FBgn0125995 I 0.736
GI22065 Drosophila mojavensis FBgn0144794 I 0.736
GJ24113 Drosophila virilis FBgn0211197 I 0.736
GK13948 Drosophila willistoni FBgn0215954 I 0.744
GL23543 Drosophila persimilis FBgn0161133 I 0.736
ISCW002531 Ixodes scapularis ISCW002531 I 0.705
ISCW010321 Ixodes scapularis ISCW010321 I 0.744
ISCW010322 Ixodes scapularis ISCW010322 I 0.713
ISCW014220 Ixodes scapularis ISCW014220 I 0.721
LOC100053264 Equus caballus ENSECAG00000026873 I 0.729
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.938
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.729
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.729
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.729
PHUM290500 Pediculus humanus PHUM290500 I 0.744
Ppa-rsp-1 Pristionchus pacificus PPA18140 N 0.721
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.729
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.721
SFRS4 Gallus gallus ENSGALG00000001411 N 0.736
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.938
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.729
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.736
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.837
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.853
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.845
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.938
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 1.000
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.938
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.837
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.938
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 1.000
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.930
SRSF4 Canis familiaris ENSCAFG00000011669 N 0.705
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.938
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.938
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.938
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.930
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.938
SRSF4 Echinops telfairi ENSETEG00000009774 N 0.729
SRSF4 Homo sapiens ENSG00000116350 I 0.938
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.977
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.938
SRSF4 Gorilla gorilla ENSGGOG00000002444 N 0.814
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.938
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.891
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.984
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.938
Srsf4 Mus musculus ENSMUSG00000028911 I 0.938
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.938
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.930
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.938
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.729
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.736
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.729
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.736
SRSF5 Homo sapiens ENSG00000100650 D 0.729
SRSF5 Felis catus ENSFCAG00000008848 I 0.729
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.729
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.729
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.729
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.744
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.729
Srsf5 Mus musculus ENSMUSG00000021134 I 0.729
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.729
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.744
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.729
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.729
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.729
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.729
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.729
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.729
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.729
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.744
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.729
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.705
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.729
srsf5a Danio rerio ENSDARG00000029818 I 0.729
srsf5b Danio rerio ENSDARG00000027734 I 0.729
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.853
SRSF6 Oryzias latipes ENSORLG00000003530 I 0.845
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.853
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.829
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.837
SRSF6 Cavia porcellus ENSCPOG00000011761 I 0.806
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.845
Srsf6 Mus musculus ENSMUSG00000016921 I 0.837
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.845
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.845
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.845
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.822
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.853
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.853
SRSF6 Homo sapiens ENSG00000124193 I 0.853
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.845
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.837
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.829
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.845
srsf6a Danio rerio ENSDARG00000013729 I 0.853
srsf6b Danio rerio ENSDARG00000016783 I 0.822
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.729
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.767
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.736
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.767