CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SRSF4
(
Ornithorhynchus anatinus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOANG00000015169
T39565_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOANP00000023884
RRM
2
34
CSRYGFVEFDDLRDADDAVYELNGKDLCGERVI
ENSOANP00000023884
RRM
74
139
LIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIR
ENSOANP00000023885
RRM
1
30
YGFVEFDDLRDADDAVYELNGKDLCGERVI
ENSOANP00000023885
RRM
70
135
LIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIR
Links
Other
RRM
family RBPs
Other
Ornithorhynchus anatinus
RBPs
37 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SRSF4
Spermophilus tridecemlineatus
ENSSTOG00000015908
N
1.000
SRSF4
Equus caballus
ENSECAG00000021350
N
1.000
SRSF4
Microcebus murinus
ENSMICG00000008965
N
1.000
SFRS4
Gallus gallus
ENSGALG00000001411
N
0.990
SRSF4
Canis familiaris
ENSCAFG00000011669
N
0.980
SFRS4
Taeniopygia guttata
ENSTGUG00000000765
N
0.979
SRSF4
Choloepus hoffmanni
ENSCHOG00000013858
N
0.969
Q9XSS6_CANFA
Canis familiaris
ENSCAFG00000009289
N
0.896
Srsf4
Mus musculus
ENSMUSG00000028911
I
0.866
SRSF4
Oryctolagus cuniculus
ENSOCUG00000001837
I
0.866
Sfrs4
Rattus norvegicus
ENSRNOG00000010007
I
0.866
SRSF4
Loxodonta africana
ENSLAFG00000002575
I
0.857
SRSF6
Tupaia belangeri
ENSTBEG00000013448
N
0.772
SRSF4
Erinaceus europaeus
ENSEEUG00000008479
I
0.744
SRSF4
Dasypus novemcinctus
ENSDNOG00000000968
I
0.744
SRSF4
Homo sapiens
ENSG00000116350
I
0.744
SRSF4
Ochotona princeps
ENSOPRG00000010098
I
0.744
SRSF4
Monodelphis domestica
ENSMODG00000011052
I
0.744
SRSF4
Macaca mulatta
ENSMMUG00000007110
I
0.744
SRSF4
Sus scrofa
ENSSSCG00000003588
I
0.744
SRSF4
Cavia porcellus
ENSCPOG00000007263
I
0.744
SRSF4
Pan troglodytes
ENSPTRG00000000445
I
0.744
Ame_R018370
Ailuropoda melanoleuca
Ame_R018370
I
0.744
SRSF4
Tursiops truncatus
ENSTTRG00000002572
I
0.744
ENSPPYG00000001629
Pongo pygmaeus
ENSPPYG00000001629
I
0.744
A7MB38_BOVIN
Bos taurus
ENSBTAG00000013309
I
0.744
LOC100402973
Callithrix jacchus
ENSCJAG00000009971
I
0.744
Srsf4
Dipodomys ordii
ENSDORG00000002459
I
0.736
SRSF4
Meleagris gallopavo
ENSMGAG00000002400
I
0.736
SRSF4
Tarsius syrichta
ENSTSYG00000007903
I
0.736
SRSF4
Procavia capensis
ENSPCAG00000009879
I
0.736
WUBG_08240
Wuchereria bancrofti
WUBG_08240
N
0.729
SRSF4
Myotis lucifugus
ENSMLUG00000014770
I
0.721
SRSF5
Meleagris gallopavo
ENSMGAG00000011835
N
0.717
ENSCJAG00000031736
Callithrix jacchus
ENSCJAG00000031736
N
0.705
ENSCJAG00000010895
Callithrix jacchus
ENSCJAG00000010895
N
0.705