CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TRMT2A
(
Takifugu rubripes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTRUG00000013546
T42339_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000034568
RRM
55
120
VEIRNLPKFVGFNDLKKFLAKHGLNPHKIKLFGKQTFAFVTFKNEDERDKAMKMVHGMQWKGQVLA
ENSTRUP00000034569
RRM
55
120
VEIRNLPKFVGFNDLKKFLAKHGLNPHKIKLFGKQTFAFVTFKNEDERDKAMKMVHGMQWKGQVLA
ENSTRUP00000034570
RRM
49
114
VEIRNLPKFVGFNDLKKFLAKHGLNPHKIKLFGKQTFAFVTFKNEDERDKAMKMVHGMQWKGQVLA
Links
Other
RRM
family RBPs
Other
Takifugu rubripes
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAI42551
Xenopus laevis
AAI42551
N
0.742
TRMT2A
Anolis carolinensis
ENSACAG00000007994
N
0.712
TRMT2A
Gasterosteus aculeatus
ENSGACG00000012965
N
0.909
TRMT2A
Gallus gallus
ENSGALG00000002094
N
0.712
TRMT2A
Meleagris gallopavo
ENSMGAG00000001517
N
0.712
TRMT2A
Tetraodon nigroviridis
ENSTNIG00000016761
N
0.985
trmt2a
Xenopus tropicalis
ENSXETG00000006323
N
0.727