XM_002890828.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.1__3230__AT1G30480.1 T44487_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__3230__AT1G30480.1 RRM 299 361

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30075.m001186 Ricinus communis 30075.m001186 N 0.828
B9GGD6_POPTR Populus trichocarpa POPTR_0001s38150 N 0.828
cassava24157.valid.m1 Manihot esculenta cassava24157.valid.m1 N 0.810
cassava31871.valid.m1 Manihot esculenta cassava31871.valid.m1 N 0.797
chr4.CM0229.230.nc Lotus japonicus chr4.CM0229.230.nc N 0.873
Cucsa.048210 Cucumis sativus Cucsa.048210 N 0.889
DRT111 Arabidopsis thaliana AT1G30480-TAIR-G N 1.000
estExt_fgenesh1_pg.C_2810007 Physcomitrella patens estExt_fgenesh1_pg.C_2810007 N 0.812
Glyma07g35050.1 Glycine max Glyma07g35050.1 N 0.905
Glyma20g02910.1 Glycine max Glyma20g02910.1 N 0.921
GSVIVG00021628001 Vitis vinifera GSVIVG00021628001 N 0.859
MDP0000162585 Malus x domestica MDP0000162585 N 0.859
Medtr4g115110 Medicago truncatula Medtr4g115110 N 0.905
PDK_20s1603131g002 Phoenix dactylifera PDK_20s1603131g002 N 0.797
PK13606.1 Cannabis sativa PK13606.1 N 0.905
ppa007087m Prunus persica ppa007087m N 0.875
SB10G003990 Sorghum bicolor Sb10g003990 N 0.703