estExt_fgenesh1_pg.C_2810007 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh1_pg.C_2810007 T50557_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_2810007 RRM 291 354

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava31871.valid.m1 Manihot esculenta cassava31871.valid.m1 N 0.891
GSVIVG00021628001 Vitis vinifera GSVIVG00021628001 N 0.891
ppa007087m Prunus persica ppa007087m N 0.891
MDP0000162585 Malus x domestica MDP0000162585 N 0.875
PDK_20s1603131g002 Phoenix dactylifera PDK_20s1603131g002 N 0.875
B9GGD6_POPTR Populus trichocarpa POPTR_0001s38150 N 0.875
chr4.CM0229.230.nc Lotus japonicus chr4.CM0229.230.nc N 0.875
Glyma20g02910.1 Glycine max Glyma20g02910.1 N 0.875
30075.m001186 Ricinus communis 30075.m001186 N 0.875
Glyma07g35050.1 Glycine max Glyma07g35050.1 N 0.859
Cucsa.048210 Cucumis sativus Cucsa.048210 N 0.859
Medtr4g115110 Medicago truncatula Medtr4g115110 N 0.859
PK13606.1 Cannabis sativa PK13606.1 N 0.844
DRT111 Arabidopsis thaliana AT1G30480-TAIR-G N 0.812
XM_002890828.1 Arabidopsis lyrata fgenesh2_kg.1__3230__AT1G30480.1 N 0.812
cassava24157.valid.m1 Manihot esculenta cassava24157.valid.m1 N 0.797
SB10G003990 Sorghum bicolor Sb10g003990 N 0.766
e_gw1.6.664.1 Selaginella moellendorfii e_gw1.6.664.1 N 0.750
GRMZM2G145034 Zea mays GRMZM2G145034 N 0.750
BGIOSIBCE002155 Oryza indica BGIOSIBCE002155 N 0.750
LOC_Os01g34190 Oryza sativa LOC_Os01g34190 N 0.750
GRMZM2G003527 Zea mays GRMZM2G003527 N 0.719
mgf008467m Mimulus guttatus mgf008467m N 0.719