CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Sb03g045340
(
Sorghum bicolor
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Sb03g045340
T45968_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Sb03g045340.1
RRM
34
103
LFVGQVPKHMTEADLLAMFREVAAVDEVTVIKDKVTKVSRGCCFVICPSREEADKAVNAYHNKRTLSGAS
Sb03g045340.1
RRM
122
193
LFIGMLPKNVTDTELTDLFSKYGNVKDLQILRGSQQTSKAGCAFIKYQTKDQALAAIEALNGKHKIEGSSVP
Sb03g045340.1
RRM
369
439
LFIYHIPQDYGDQELSSAFQSFGRVLSAKVFVDKATGVSKCFGFVSYDSPTSAQAAINRMNGYQLGGKKLK
Sb03g045340.2
RRM
1
53
MFREVAAVDEVTVIKDKVTKVSRGCCFVICPSREEADKAVNAYHNKRTLSGAS
Sb03g045340.2
RRM
72
143
LFIGMLPKNVTDTELTDLFSKYGNVKDLQILRGSQQTSKAGCAFIKYQTKDQALAAIEALNGKHKIEGSSVP
Sb03g045340.2
RRM
319
389
LFIYHIPQDYGDQELSSAFQSFGRVLSAKVFVDKATGVSKCFGFVSYDSPTSAQAAINRMNGYQLGGKKLK
Links
Other
RRM
family RBPs
Other
Sorghum bicolor
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CNL1
Candida albicans
orf19.1750
N
0.000
estExt_fgenesh1_pg.C_chr_5.10527
Pichia stipitis
estExt_fgenesh1_pg.C_chr_5.10527
N
0.000