CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TGVEG_008880
(
Toxoplasma gondii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
TGVEG_008880
T47992_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
TGVEG_008880
RRM
141
210
VYVGNVDYSSTPAELQEHFKSCGTINRITIMVDKYTGHPKGYAYIEFNSEAAVQNAILLSDTVFKQRQIK
Links
Other
RRM
family RBPs
Other
Toxoplasma gondii
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
D4AC21_RAT
Rattus norvegicus
ENSRNOG00000015642
I
0.000
ENSETEG00000002793
Echinops telfairi
ENSETEG00000002793
N
0.000
ENSMGAG00000005408
Meleagris gallopavo
ENSMGAG00000005408
N
0.000
ENSSARG00000004448
Sorex araneus
ENSSARG00000004448
N
0.000
PABPC4
Choloepus hoffmanni
ENSCHOG00000005327
N
0.000
Pabpc4
Mus musculus
ENSMUSG00000011257
I
0.000
PABPC4
Pteropus vampyrus
ENSPVAG00000002187
N
0.000
PABPC4
Sorex araneus
ENSSARG00000000310
N
0.000