CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Cucsa.327930
(
Cucumis sativus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Cucsa.327930
T49635_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.327930.1
RRM
10
80
LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNMDGAELYGRVLT
Links
Other
RRM
family RBPs
Other
Cucumis sativus
RBPs
25 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
182.m000593
Tetrahymena thermophila
182.m000593
N
0.000
182.m000594
Tetrahymena thermophila
182.m000594
N
0.000
PTTG_06249
Puccinia triticina
PTTG_06249
N
0.000