Cucsa.327930 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.327930 T49635_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.327930.1 RRM 10 80

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Medtr5g047590 Medicago truncatula Medtr5g047590 N 0.986
cassava7442.valid.m1 Manihot esculenta cassava7442.valid.m1 N 0.986
Glyma02g13280.1 Glycine max Glyma02g13280.1 N 0.986
MDP0000193642 Malus x domestica MDP0000193642 N 0.972
GSVIVG00010778001 Vitis vinifera GSVIVG00010778001 N 0.972
MDP0000319973 Malus x domestica MDP0000319973 N 0.972
ppa012381m Prunus persica ppa012381m N 0.972
XM_002889971.1 Arabidopsis lyrata fgenesh2_kg.1__1483__AT1G13690.1 N 0.958
ATE1 Arabidopsis thaliana AT1G13690-TAIR-G N 0.958
Glyma01g07800.1 Glycine max Glyma01g07800.1 N 0.958
MDP0000588137 Malus x domestica MDP0000588137 N 0.958
MDP0000219767 Malus x domestica MDP0000219767 N 0.958
MDP0000271129 Malus x domestica MDP0000271129 N 0.958
30174.m009088 Ricinus communis 30174.m009088 N 0.944
B9HIG1_POPTR Populus trichocarpa POPTR_0008s09710 N 0.930
LOC_Os03g40310 Oryza sativa LOC_Os03g40310 N 0.901
B9HXI2_POPTR Populus trichocarpa POPTR_0010s16450 N 0.901
BGIOSIBCE012002 Oryza indica BGIOSIBCE012002 N 0.901
BRADI1G15040 Brachypodium distachyon BRADI1G15040 N 0.887
SB01G015060 Sorghum bicolor Sb01g015060 N 0.873
GRMZM2G138572 Zea mays GRMZM2G138572 N 0.873
estExt_Genewise1.C_40283 Selaginella moellendorfii estExt_Genewise1.C_40283 N 0.761
fgenesh1_pm.scaffold_10000011 Physcomitrella patens fgenesh1_pm.scaffold_10000011 N 0.708
fgenesh1_pg.scaffold_18000061 Physcomitrella patens fgenesh1_pg.scaffold_18000061 N 0.704
PK11881.1 Cannabis sativa PK11881.1 N 0.704