fgenesh2_pm.scaffold_186000008 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_pm.scaffold_186000008 T52292_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
aret_CONSTRUCT
M229_0.6 		RNAcompete CONSTRUCTS UKUGUGU RNAcompete
Ray et al.(2013)
RNCMPT00270 		0.761
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pm.scaffold_186000008 RRM 81 151

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Aqu1.201090 Amphimedon queenslandica Aqu1.201090 N 0.000
CC1G_00600 Coprinopsis cinerea CC1G_00600 N 0.000
PGTG_02503 Puccinia graminis PGTG_02503 N 0.000
PGTG_10340 Puccinia graminis PGTG_10340 N 0.000
PGTG_17297 Puccinia graminis PGTG_17297 N 0.000
PTTG_02510 Puccinia triticina PTTG_02510 N 0.000
PTTG_05176 Puccinia triticina PTTG_05176 N 0.000
PTTG_09337 Puccinia triticina PTTG_09337 N 0.000
PTTG_10560 Puccinia triticina PTTG_10560 N 0.000
PTTG_10566 Puccinia triticina PTTG_10566 N 0.000
PTTG_10569 Puccinia triticina PTTG_10569 N 0.000