CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Cd36_04140
(
Candida dubliniensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Cd36_04140
T55726_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cd36_04140
RRM
35
104
LFIRSIPFDATSEELSEYFSQFVPVKHAVIVTDNEGKSRGFGFVSFTLDEDCLTALVESRKTKFKDRLLR
Cd36_04140
RRM
137
207
LIIRNLPWSCKKPDELKKIFSKYGAVFDAYIPKKKGGQMCGFAFVIMKKKSAAEKAVEGCQGLKINGREVA
Cd36_04140
RRM
312
376
IFIRNIPYDADAESLKEHFSTFGSVKYALPVVDKETGLSKGSAFVAFAKEDAYLDCLENAPTVAS
Cd36_04140
RRM
551
602
SKHKGVVKQAKVIMEVKGSGETGRSRGYGFIEFRDHKAALMGLRWLNAHEVS
Links
Other
RRM
family RBPs
Other
Candida dubliniensis
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CLUG_01419
Candida lusitaniae
CLUG_01419
N
0.747
CPAG_03658
Candida parapsilosis
CPAG_03658
N
0.814
CTRG_04719
Candida tropicalis
CTRG_04719
N
0.930
DEHA0D14388g
Debaryomyces hansenii
DEHA0D14388g
N
0.815
estExt_gwp_genewisePlus_human.C_chr_6.11569
Pichia stipitis
estExt_gwp_genewisePlus_human.C_chr_6.11569
N
0.783
LELG_01834
Lodderomyces elongisporus
LELG_01834
N
0.795
NOP4
Candida albicans
orf19.5198
N
0.950
PGUG_04796
Candida guilliermondii
PGUG_04796
N
0.717