CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CLUG_01419
(
Candida lusitaniae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CLUG_01419
T28714_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CLUT_01419
RRM
22
91
LFVRSIPEDATNEELSEYFSQFVPVKHAVIVTDEEKKSRGFGFVSFPMDEDTLTALVEAKKQKFKGRFLR
CLUT_01419
RRM
127
197
LIIRNLPWSCKSPDTLRNIFQKYGAVHDAYIPAKKGGLMKGFAFVTMKKHAAAERAVKESVGLKIDGREVA
CLUT_01419
RRM
293
358
VFVRNIPYDADKDSLKEHFSQFGPVKYALPMVDKMTGVARGSAFVAFKTAEAYNDCLSNAPEVSNT
CLUT_01419
RRM
535
592
KNKKQGVVKQAKVVMEVKGNSEIGRSRGYGFIEFRDHKSALMGLRWLNAHEVTPQEIL
Links
Other
RRM
family RBPs
Other
Candida lusitaniae
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPAG_03658
Candida parapsilosis
CPAG_03658
N
0.774
CTRG_04719
Candida tropicalis
CTRG_04719
N
0.770
LELG_01834
Lodderomyces elongisporus
LELG_01834
N
0.758
DEHA0D14388g
Debaryomyces hansenii
DEHA0D14388g
N
0.758
NOP4
Candida albicans
orf19.5198
N
0.751
Cd36_04140
Candida dubliniensis
Cd36_04140
N
0.747
estExt_gwp_genewisePlus_human.C_chr_6.11569
Pichia stipitis
estExt_gwp_genewisePlus_human.C_chr_6.11569
N
0.739
PGUG_04796
Candida guilliermondii
PGUG_04796
N
0.737