chr1.CM0178.490.nc (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr1.CM0178.490.nc T55800_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0178.490.nc RRM 10 80

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29633.m000882 Ricinus communis 29633.m000882 N 0.803
A9P8S6_POPTR Populus trichocarpa POPTR_0009s11920 N 0.761
A9P8Z7_POPTR Populus trichocarpa POPTR_0004s16260 N 0.761
BGIOSIBCE012432 Oryza indica BGIOSIBCE012432 N 0.803
BGIOSIBCE037445 Oryza indica BGIOSIBCE037445 N 0.831
BRADI1G12787 Brachypodium distachyon BRADI1G12787 N 0.789
BRADI4G00940 Brachypodium distachyon BRADI4G00940 N 0.704
cassava22279.valid.m1 Manihot esculenta cassava22279.valid.m1 N 0.761
cassava22280.valid.m1 Manihot esculenta cassava22280.valid.m1 N 0.761
cassava22281.valid.m1 Manihot esculenta cassava22281.valid.m1 N 0.761
cassava6967.valid.m1 Manihot esculenta cassava6967.valid.m1 N 0.831
CCR2 Arabidopsis thaliana AT2G21660-TAIR-G N 0.775
chr3.CM0091.630.nd Lotus japonicus chr3.CM0091.630.nd N 0.859
chr3.CM0091.670.nd Lotus japonicus chr3.CM0091.670.nd N 0.775
Cucsa.109630 Cucumis sativus Cucsa.109630 N 0.789
fgenesh1_pg.scaffold_42000167 Physcomitrella patens fgenesh1_pg.scaffold_42000167 N 0.746
Glyma06g01470.1 Glycine max Glyma06g01470.1 N 0.901
Glyma11g12480.1 Glycine max Glyma11g12480.1 N 0.859
Glyma11g12490.1 Glycine max Glyma11g12490.1 N 0.887
GRMZM2G080603 Zea mays GRMZM2G080603 N 0.732
GRMZM2G165901 Zea mays GRMZM2G165901 N 0.789
GRP2_SORBI Sorghum bicolor Sb01g012300 N 0.761
GSVIVG00031973001 Vitis vinifera GSVIVG00031973001 N 0.831
gw1.123.70.1 Physcomitrella patens gw1.123.70.1 N 0.718
gw1.136.87.1 Physcomitrella patens gw1.136.87.1 N 0.704
LOC_Os03g46770 Oryza sativa LOC_Os03g46770 N 0.803
LOC_Os12g43600 Oryza sativa LOC_Os12g43600 N 0.817
MDP0000260339 Malus x domestica MDP0000260339 N 0.789
MDP0000797759 Malus x domestica MDP0000797759 N 0.901
Medtr4g095640 Medicago truncatula Medtr4g095640 N 0.887
Medtr4g095700 Medicago truncatula Medtr4g095700 N 0.803
Medtr4g095740 Medicago truncatula Medtr4g095740 N 0.831
mgf000685m Mimulus guttatus mgf000685m N 0.746
mgf001195m Mimulus guttatus mgf001195m N 0.746
SB08G022740 Sorghum bicolor Sb08g022740 N 0.732
XM_002868851.1 Arabidopsis lyrata fgenesh2_kg.7__133__AT4G39260.1 N 0.704
XM_002880346.1 Arabidopsis lyrata fgenesh2_kg.4__94__AT2G21660.2 N 0.789