CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh1_pg.C_30620
(
Cryphonectria parasitica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_fgenesh1_pg.C_30620
T56222_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pg.C_30620
RRM
279
345
VYIRGLHPTTDDDLLSKYAARFGEVEQSKAIIDTATGACKGFGFAKFKDVRDSEKCIQGFYLLGYEV
estExt_fgenesh1_pg.C_30620
RRM
367
434
LYISNLPKSITEAQLVAIFEPYQILSSKILRDSMGNSRGVGFARFESRDVCEEIIKRFHGQAIGDECF
Links
Other
RRM
family RBPs
Other
Cryphonectria parasitica
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PBANKA_120080
Plasmodium berghei
PBANKA_120080
N
0.000
PCHAS_120150
Plasmodium chabaudi
PCHAS_120150
N
0.000
PF10_0028-b
Plasmodium falciparum
PF10_0028-b
N
0.000
PVX_094315
Plasmodium vivax
PVX_094315
N
0.000