CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pc21g01490
(
Penicillium chrysogenum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Pc21g01490
T57996_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pc21g01490.t1
RRM
82
150
CHVGNLSFEATDADISEFFSGCGVTSVRLVEDKLTKAPKGFGYVEFETVEGLKKALDLSGSSFQGRSIR
Links
Other
RRM
family RBPs
Other
Penicillium chrysogenum
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACLA_075320
Aspergillus clavatus
CADACLAG00006833
N
0.768
AFLA_003440
Aspergillus flavus
CADAFLAG00010410
N
0.768
AFUA_2G16400
Aspergillus fumigatus
CADAFUAG00004230
N
0.754
An15g06790
Aspergillus niger
CADANGAG00012358
N
0.797
ANIA_07350
Aspergillus nidulans
CADANIAG00000083
N
0.783
AO090102000222
Aspergillus oryzae
CADAORAG00009578
N
0.768
ATEG_02298
Aspergillus terreus
CADATEAG00000182
N
0.768
CIMG_09493
Coccidioides immitis
CIMG_09493
N
0.710
CPSG_04053
Coccidioides posadasii
CPSG_04053
N
0.725
estExt_fgenesh1_pg.C_180055
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_180055
N
0.710
fgenesh1_pg.00815_#_18
Aspergillus carbonarius
fgenesh1_pg.00815_#_18
N
0.783
MCYG_03836
Microsporum canis
MCYG_03836
N
0.710
MGYG_07815
Microsporum gypseum
MGYG_07815
N
0.710
NFIA_091670
Neosartorya fischeri
CADNFIAG00006889
N
0.783
PABG_02641
Paracoccidioides brasiliensis
PABG_02641
N
0.710