CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC100409512
(
Callithrix jacchus
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
ENSCJAG00000006259
T60292_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000011555
S1
1
62
MVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLS
ENSCJAP00000011583
S1
16
57
SIELMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLS
ENSCJAP00000041094
S1
1
62
MVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLS
ENSCJAP00000042103
S1
13
86
PALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLS
ENSCJAP00000043151
S1
1
45
GLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLS
ENSCJAP00000052040
S1
9
78
EKNKAYVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLS
Links
Other
S1
family RBPs
Other
Callithrix jacchus
RBPs
39 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gww2.1.919.1
Phanerochaete chrysosporium
e_gww2.1.919.1
N
0.000
mgf019161m
Mimulus guttatus
mgf019161m
N
0.000
mgf023481m
Mimulus guttatus
mgf023481m
N
0.000
mgf024003m
Mimulus guttatus
mgf024003m
N
0.000
mgf025561m
Mimulus guttatus
mgf025561m
N
0.000