CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XM_002882275.1
(
Arabidopsis lyrata
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
fgenesh2_kg.3__349__AT3G03950.3
T62209_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_kg.3__349__AT3G03950.3
YTH
295
385
LLFSVNASGQFVGLAEMVGPVDFNKTMEYWQQDKWIGCFPVKWHIIKDIPNSLLRHITLANNENKPVTNSRDTQEVNLEHGTKIIKILKEY
Links
Other
YTH
family RBPs
Other
Arabidopsis lyrata
RBPs
140 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GA27297-RA
Drosophila pseudoobscura
FBgn0248665
I
0.000
GD18916
Drosophila simulans
FBgn0190427
I
0.000
GE26283
Drosophila yakuba
FBgn0243314
I
0.000
GF17607
Drosophila ananassae
FBgn0094625
I
0.000
GG19770
Drosophila erecta
FBgn0111971
I
0.000
GI22064
Drosophila mojavensis
FBgn0144793
I
0.000
GL23542
Drosophila persimilis
FBgn0161132
I
0.000
rin
Drosophila melanogaster
FBgn0015778
D
0.000