XM_002882275.1 (Arabidopsis lyrata)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 fgenesh2_kg.3__349__AT3G03950.3 T62209_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__349__AT3G03950.3 YTH 295 385

Links

Other YTH family RBPs
Other Arabidopsis lyrata RBPs

140 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29929.m004643 Ricinus communis 29929.m004643 N 0.736
29950.m001140 Ricinus communis 29950.m001140 N 0.802
29955.m001158 Ricinus communis 29955.m001158 N 0.703
30169.m006347 Ricinus communis 30169.m006347 N 0.714
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.813
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.725
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.780
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.725
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.725
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.703
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.725
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.736
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.703
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.703
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.703
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.703
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.703
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.780
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.725
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.714
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.791
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.714
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.703
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.703
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.714
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.703
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.736
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.714
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.769
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.813
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.813
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.813
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.813
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.780
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.780
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.780
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.714
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.714
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.714
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.780
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.780
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.802
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.813
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.813
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.813
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.802
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.802
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.802
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.802
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.802
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.802
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.802
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.802
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.802
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.802
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.802
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.802
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.703
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.703
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.747
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.703
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.780
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.989
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.802
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.857
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.780
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.747
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.714
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.769
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.824
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.813
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.703
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.780
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.703
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.791
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.714
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.703
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.758
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.714
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.780
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.703
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.703
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.703
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.769
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.747
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.747
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.791
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.714
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.703
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.703
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.725
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.736
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.703
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.780
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.725
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.714
MDP0000124048 Malus x domestica MDP0000124048 N 0.791
MDP0000129009 Malus x domestica MDP0000129009 N 0.846
MDP0000132385 Malus x domestica MDP0000132385 N 0.725
MDP0000171737 Malus x domestica MDP0000171737 N 0.736
MDP0000231231 Malus x domestica MDP0000231231 N 0.714
MDP0000248088 Malus x domestica MDP0000248088 N 0.703
MDP0000286471 Malus x domestica MDP0000286471 N 0.714
MDP0000287088 Malus x domestica MDP0000287088 N 0.703
MDP0000306387 Malus x domestica MDP0000306387 N 0.725
MDP0000405927 Malus x domestica MDP0000405927 N 0.703
MDP0000488588 Malus x domestica MDP0000488588 N 0.769
MDP0000552419 Malus x domestica MDP0000552419 N 0.703
MDP0000617859 Malus x domestica MDP0000617859 N 0.703
MDP0000718677 Malus x domestica MDP0000718677 N 0.846
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.802
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.780
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.780
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.802
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.714
mgf009938m Mimulus guttatus mgf009938m N 0.769
mgf013853m Mimulus guttatus mgf013853m N 0.769
mgf013935m Mimulus guttatus mgf013935m N 0.780
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.758
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.714
PK01736.1 Cannabis sativa PK01736.1 N 0.703
PK17832.1 Cannabis sativa PK17832.1 N 0.736
PK23104.1 Cannabis sativa PK23104.1 N 0.736
PK23716.1 Cannabis sativa PK23716.1 N 0.824
ppa002483m Prunus persica ppa002483m N 0.725
ppa002588m Prunus persica ppa002588m N 0.725
ppa003664m Prunus persica ppa003664m N 0.703
ppa018635m Prunus persica ppa018635m N 0.703
SB01G005500 Sorghum bicolor Sb01g005500 N 0.780
SB01G008170 Sorghum bicolor Sb01g008170 N 0.758
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.703
SB02G003990 Sorghum bicolor Sb02g003990 N 0.769
SB03G031190 Sorghum bicolor Sb03g031190 N 0.703
SB07G006330 Sorghum bicolor Sb07g006330 N 0.703
SB07G024500 Sorghum bicolor Sb07g024500 N 0.714
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.857
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.747
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.802
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.714
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.791